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  • bioinfo
  • ngs_tools
  • Issues

  • Open 3
  • Closed 34
  • All 37
New issue
  • Priority Created date Last updated Milestone due date Due date Popularity Label priority Manual Title
  • gsea: fixing expression explorer
    #103 · created Apr 08, 2021 by gohr   Bioinformatics Internal Non-rechargeable rna_seq
    • CLOSED
    • 0
    updated Apr 08, 2021
  • gsea: improvement of description
    #102 · created Apr 08, 2021 by gohr   Bioinformatics Internal Non-rechargeable rna_seq
    • CLOSED
    • 1
    updated Apr 08, 2021
  • GSEA: improve color code of KEGG pathways
    #101 · created Mar 23, 2021 by gohr   rna_seq
    • CLOSED
    • 0
    updated Mar 23, 2021
  • exDesign: numeric vs categorical variables and shrinkage method
    #100 · created Feb 15, 2021 by gohr   rna_seq
    • CLOSED
    • 0
    updated Feb 23, 2021
  • gsea: better description
    #99 · created Nov 12, 2020 by domingue   rna_seq
    • CLOSED
    • 2
    updated Nov 19, 2020
  • Gene enrichment: script selects random genes if list too large
    #98 · created Oct 07, 2020 by domingue   rna_seq
    • CLOSED
    • 2
    updated Oct 07, 2020
  • gsea: improvments   2 of 4 tasks completed
    #97 · created Sep 24, 2020 by domingue   rna_seq
    • 0
    updated Oct 13, 2020
  • gsea: generate results for each contrast
    #96 · created Sep 16, 2020 by domingue   rna_seq
    • CLOSED
    • 1
    updated Sep 23, 2020
  • gsea: bug, in extra sets the first line is being read as header
    #95 · created Sep 15, 2020 by domingue   rna_seq
    • CLOSED
    • 0
    updated Sep 15, 2020
  • gsea: bug, hard-coded species
    #94 · created Sep 15, 2020 by domingue   rna_seq
    • CLOSED
    • 0
    updated Sep 15, 2020
  • GSEA: add option to use custom gene sets
    #93 · created Sep 09, 2020 by domingue   rna_seq
    • CLOSED
    • 1
    updated Sep 09, 2020
  • GSEA
    #92 · created Aug 07, 2020 by domingue   rna_seq
    • CLOSED
    • 5
    updated Sep 23, 2020
  • dge_workflow: expression_explorer app failed to load due to renamed/additional annotation columns
    #91 · created Jul 10, 2020 by herseman   rna_seq
    • CLOSED
    • 1
    updated Jul 10, 2020
  • argparser error when --bam_files is the last optional argument
    #90 · created Jul 01, 2020 by domingue   rna_seq
    • CLOSED
    • 4
    updated Jul 01, 2020
  • Stranded counts
    #88 · created Mar 27, 2020 by domingue   rna_seq
    • 5
    updated Jul 13, 2020
  • Hardcoded pvalue in plot
    #85 · created Mar 13, 2020 by domingue   rna_seq
    • CLOSED
    • 5
    updated Apr 15, 2020
  • dge_workflow: collect_kallisto_data.R fails for paired-end data
    #84 · created Mar 12, 2020 by herseman   rna_seq
    • CLOSED
    • 2
    updated Mar 12, 2020
  • dge _workflow: analyze duplicates has a broken link to the plot of the model (dupRadar)
    #81 · created Feb 10, 2020 by domingue   rna_seq
    • CLOSED
    • 1
    updated Feb 10, 2020
  • iGenome permissions
    #76 · created Nov 15, 2019 by domingue   rna_seq
    • CLOSED
    • 0
    updated Feb 20, 2020
  • dge_workflow: future improvements
    #75 · created Oct 22, 2019 by domingue   rna_seq
    • CLOSED
    • 1
    updated Jul 20, 2020
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