Issues · bioinfo / ngs_tools

New issue

gsea: fixing expression explorer

#103 · created Apr 08, 2021 by gohr Bioinformatics Internal Non-rechargeable rna_seq
- CLOSED
- 0
updated Apr 08, 2021
gsea: improvement of description

#102 · created Apr 08, 2021 by gohr Bioinformatics Internal Non-rechargeable rna_seq
- CLOSED
- 1
updated Apr 08, 2021
GSEA: improve color code of KEGG pathways

#101 · created Mar 23, 2021 by gohr rna_seq
- CLOSED
- 0
updated Mar 23, 2021
exDesign: numeric vs categorical variables and shrinkage method

#100 · created Feb 15, 2021 by gohr rna_seq
- CLOSED
- 0
updated Feb 23, 2021
gsea: better description

#99 · created Nov 12, 2020 by domingue rna_seq
- CLOSED
- 2
updated Nov 19, 2020
Gene enrichment: script selects random genes if list too large

#98 · created Oct 07, 2020 by domingue rna_seq
- CLOSED
- 2
updated Oct 07, 2020
gsea: improvments 2 of 4 tasks completed

#97 · created Sep 24, 2020 by domingue rna_seq
- 0
updated Oct 13, 2020
gsea: generate results for each contrast

#96 · created Sep 16, 2020 by domingue rna_seq
- CLOSED
- 1
updated Sep 23, 2020
gsea: bug, in extra sets the first line is being read as header

#95 · created Sep 15, 2020 by domingue rna_seq
- CLOSED
- 0
updated Sep 15, 2020
gsea: bug, hard-coded species

#94 · created Sep 15, 2020 by domingue rna_seq
- CLOSED
- 0
updated Sep 15, 2020
GSEA: add option to use custom gene sets

#93 · created Sep 09, 2020 by domingue rna_seq
- CLOSED
- 1
updated Sep 09, 2020
GSEA

#92 · created Aug 07, 2020 by domingue rna_seq
- CLOSED
- 5
updated Sep 23, 2020
dge_workflow: expression_explorer app failed to load due to renamed/additional annotation columns

#91 · created Jul 10, 2020 by herseman rna_seq
- CLOSED
- 1
updated Jul 10, 2020
argparser error when --bam_files is the last optional argument

#90 · created Jul 01, 2020 by domingue rna_seq
- CLOSED
- 4
updated Jul 01, 2020
Stranded counts

#88 · created Mar 27, 2020 by domingue rna_seq
- 5
updated Jul 13, 2020
Hardcoded pvalue in plot

#85 · created Mar 13, 2020 by domingue rna_seq
- CLOSED
- 5
updated Apr 15, 2020
dge_workflow: collect_kallisto_data.R fails for paired-end data

#84 · created Mar 12, 2020 by herseman rna_seq
- CLOSED
- 2
updated Mar 12, 2020
dge _workflow: analyze duplicates has a broken link to the plot of the model (dupRadar)

#81 · created Feb 10, 2020 by domingue rna_seq
- CLOSED
- 1
updated Feb 10, 2020
iGenome permissions

#76 · created Nov 15, 2019 by domingue rna_seq
- CLOSED
- 0
updated Feb 20, 2020
dge_workflow: future improvements

#75 · created Oct 22, 2019 by domingue rna_seq
- CLOSED
- 1
updated Jul 20, 2020