Issues · bioinfo / ngs_tools · GitLab

dge_workflow: fix lcf help

#74 · created Oct 22, 2019 by domingue rna_seq
- CLOSED
- 0
updated Dec 02, 2019
Implement renvs

#73 · created Sep 16, 2019 by domingue mass_spec rna_seq
- CLOSED
- 2
updated Feb 20, 2020
Changes in ggplot break boxplot in fastqc_summary.R

#72 · created Sep 09, 2019 by domingue rna_seq
- CLOSED
- 1
updated Sep 09, 2019
Grep error message crashes the script

#71 · created Sep 09, 2019 by domingue rna_seq
- CLOSED
- 0
updated Sep 09, 2019
cut delimeter breaks fastqc_summary.R

#70 · created Sep 09, 2019 by domingue rna_seq
- CLOSED
- 0
updated Sep 09, 2019
expression_explorer: harcoded Rscipt path

#67 · created Aug 15, 2019 by domingue rna_seq
- CLOSED
- 0
updated Aug 21, 2019
dge workflow: add GTF an argument for differential gene expression

#57 · created Jun 20, 2019 by domingue rna_seq
- 2
updated Jun 28, 2019
dge_workflow: echoing R code in to Rscript not loading personal library packages

#56 · created Jun 19, 2019 by domingue rna_seq
- CLOSED
- 2
updated Jun 20, 2019
export TPM instead of FPKM tables

#14 · created May 19, 2017 by brandl rna_seq
- CLOSED
- 1
updated Jun 19, 2017
Add option to perform diffex-test in mf_feat_counts.R using fc-cutoff > 0.

#12 · created Apr 10, 2017 by brandl rna_seq
- CLOSED
- 2
updated Jun 19, 2017
Integrate tools to assess gc/3/5 bias, insert size, and capture efficiency

#11 · created Oct 11, 2016 by brandl rna_seq
- CLOSED
- 1
updated Feb 20, 2020
use http://multiqc.info/ for qc reporting

#10 · created Jul 29, 2016 by brandl rna_seq
- CLOSED
- 1
updated Nov 18, 2019
Export counts as TPM in featcounts_deseq_mf.R

#9 · created May 18, 2016 by brandl rna_seq
- CLOSED
- 0
updated Jul 08, 2017
create tool to create igv session file list of bam files

#8 · created May 14, 2016 by brandl rna_seq
- CLOSED
- 1
updated Jul 08, 2017
finish panther enrichment and reintegrate into cp_enrichment.R

#7 · created May 12, 2016 by brandl rna_seq
- CLOSED
- 2
updated Feb 20, 2020
Add pcr duplication analysis for rna-seq workflow

#6 · created Apr 22, 2016 by brandl rna_seq
- CLOSED
- 0
updated Nov 09, 2017
make sure that exported tables contain double-normalized counts and not just size-normalized ones

#1 · created Feb 05, 2016 by brandl rna_seq
- CLOSED
- 2
updated Feb 12, 2019