Issues · bioinfo / ngs_tools

New issue

use http://multiqc.info/ for qc reporting

#10 · created Jul 29, 2016 by brandl rna_seq
- CLOSED
- 1
updated Nov 18, 2019
make sure that exported tables contain double-normalized counts and not just size-normalized ones

#1 · created Feb 05, 2016 by brandl rna_seq
- CLOSED
- 2
updated Feb 12, 2019
Integrate tools to assess gc/3/5 bias, insert size, and capture efficiency

#11 · created Oct 11, 2016 by brandl rna_seq
- CLOSED
- 1
updated Feb 20, 2020
Implement renvs

#73 · created Sep 16, 2019 by domingue mass_spec rna_seq
- CLOSED
- 2
updated Feb 20, 2020
iGenome permissions

#76 · created Nov 15, 2019 by domingue rna_seq
- CLOSED
- 0
updated Feb 20, 2020
Hardcoded pvalue in plot

#85 · created Mar 13, 2020 by domingue rna_seq
- CLOSED
- 5
updated Apr 15, 2020
gsea: improvement of description

#102 · created Apr 08, 2021 by gohr Bioinformatics Internal Non-rechargeable rna_seq
- CLOSED
- 1
updated Apr 08, 2021
GSEA: improve color code of KEGG pathways

#101 · created Mar 23, 2021 by gohr rna_seq
- CLOSED
- 0
updated Mar 23, 2021
gsea: generate results for each contrast

#96 · created Sep 16, 2020 by domingue rna_seq
- CLOSED
- 1
updated Sep 23, 2020
gsea: fixing expression explorer

#103 · created Apr 08, 2021 by gohr Bioinformatics Internal Non-rechargeable rna_seq
- CLOSED
- 0
updated Apr 08, 2021
gsea: bug, in extra sets the first line is being read as header

#95 · created Sep 15, 2020 by domingue rna_seq
- CLOSED
- 0
updated Sep 15, 2020
gsea: bug, hard-coded species

#94 · created Sep 15, 2020 by domingue rna_seq
- CLOSED
- 0
updated Sep 15, 2020
gsea: better description

#99 · created Nov 12, 2020 by domingue rna_seq
- CLOSED
- 2
updated Nov 19, 2020
GSEA: add option to use custom gene sets

#93 · created Sep 09, 2020 by domingue rna_seq
- CLOSED
- 1
updated Sep 09, 2020
GSEA

#92 · created Aug 07, 2020 by domingue rna_seq
- CLOSED
- 5
updated Sep 23, 2020
Grep error message crashes the script

#71 · created Sep 09, 2019 by domingue rna_seq
- CLOSED
- 0
updated Sep 09, 2019
Gene enrichment: script selects random genes if list too large

#98 · created Oct 07, 2020 by domingue rna_seq
- CLOSED
- 2
updated Oct 07, 2020
finish panther enrichment and reintegrate into cp_enrichment.R

#7 · created May 12, 2016 by brandl rna_seq
- CLOSED
- 2
updated Feb 20, 2020
expression_explorer: harcoded Rscipt path

#67 · created Aug 15, 2019 by domingue rna_seq
- CLOSED
- 0
updated Aug 21, 2019
export TPM instead of FPKM tables

#14 · created May 19, 2017 by brandl rna_seq
- CLOSED
- 1
updated Jun 19, 2017