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bioinfo
ngs_tools
Issues
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15
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88
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103
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Title
Priority
Created date
Last updated
Milestone due date
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Popularity
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Title
dge_workflow: echoing R code in to Rscript not loading personal library packages
#56
· created
Jun 19, 2019
by
domingue
rna_seq
CLOSED
2
updated
Jun 20, 2019
dge_workflow: error message because gtf_file did not exist
#58
· created
Jun 27, 2019
by
herseman
CLOSED
1
updated
Jun 27, 2019
dge_workflow: expression_explorer app failed to load due to renamed/additional annotation columns
#91
· created
Jul 10, 2020
by
herseman
rna_seq
CLOSED
1
updated
Jul 10, 2020
dge_workflow: fix lcf help
#74
· created
Oct 22, 2019
by
domingue
rna_seq
CLOSED
0
updated
Dec 02, 2019
dge_workflow: future improvements
#75
· created
Oct 22, 2019
by
domingue
rna_seq
CLOSED
1
updated
Jul 20, 2020
dge_workflow: include MA plot from ggpubr in dge report
#55
· created
Jun 07, 2019
by
herseman
CLOSED
1
updated
Jun 18, 2019
dge_workflow: report number of reads per gene
#51
· created
May 31, 2019
by
herseman
14
updated
Jun 30, 2020
error in the plotDispEsts()
#2
· created
Mar 07, 2016
by
lakshman
CLOSED
7
updated
Jul 08, 2017
exDesign: numeric vs categorical variables and shrinkage method
#100
· created
Feb 15, 2021
by
gohr
rna_seq
CLOSED
0
updated
Feb 23, 2021
Export counts as TPM in featcounts_deseq_mf.R
#9
· created
May 18, 2016
by
brandl
rna_seq
CLOSED
0
updated
Jul 08, 2017
export TPM instead of FPKM tables
#14
· created
May 19, 2017
by
brandl
rna_seq
CLOSED
1
updated
Jun 19, 2017
expression_explorer: harcoded Rscipt path
#67
· created
Aug 15, 2019
by
domingue
rna_seq
CLOSED
0
updated
Aug 21, 2019
finish panther enrichment and reintegrate into cp_enrichment.R
#7
· created
May 12, 2016
by
brandl
rna_seq
CLOSED
2
updated
Feb 20, 2020
Gene enrichment: script selects random genes if list too large
#98
· created
Oct 07, 2020
by
domingue
rna_seq
CLOSED
2
updated
Oct 07, 2020
general: add multiQC report to fastqc_summary
#54
· created
Jun 05, 2019
by
herseman
CLOSED
4
updated
Dec 02, 2019
general: create customized docker files for individual analyses done with our ngs_tools scripts
#39
· created
Feb 11, 2019
by
herseman
3
updated
Mar 14, 2019
general: create new human igenome for the Ensembl release 95
#49
· created
Apr 05, 2019
by
herseman
CLOSED
1
updated
Apr 05, 2019
general: create new human igenome for the Ensembl release 99
#89
· created
Jun 24, 2020
by
herseman
CLOSED
0
updated
Jun 24, 2020
general: create templates for R scripts and shinyApps and revise the dge_star_template
#50
· created
May 10, 2019
by
herseman
1
updated
May 14, 2019
general: fix issues which occur due to updated R package versions
#48
· created
Apr 03, 2019
by
herseman
CLOSED
1
updated
Apr 09, 2019
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