Issues · bioinfo / ngs_tools · GitLab

dge_workflow: echoing R code in to Rscript not loading personal library packages

#56 · created Jun 19, 2019 by domingue rna_seq
- CLOSED
- 2
updated Jun 20, 2019
dge_workflow: error message because gtf_file did not exist

#58 · created Jun 27, 2019 by herseman
- CLOSED
- 1
updated Jun 27, 2019
dge_workflow: expression_explorer app failed to load due to renamed/additional annotation columns

#91 · created Jul 10, 2020 by herseman rna_seq
- CLOSED
- 1
updated Jul 10, 2020
dge_workflow: fix lcf help

#74 · created Oct 22, 2019 by domingue rna_seq
- CLOSED
- 0
updated Dec 02, 2019
dge_workflow: future improvements

#75 · created Oct 22, 2019 by domingue rna_seq
- CLOSED
- 1
updated Jul 20, 2020
dge_workflow: include MA plot from ggpubr in dge report

#55 · created Jun 07, 2019 by herseman
- CLOSED
- 1
updated Jun 18, 2019
dge_workflow: report number of reads per gene

#51 · created May 31, 2019 by herseman
- 14
updated Jun 30, 2020
error in the plotDispEsts()

#2 · created Mar 07, 2016 by lakshman
- CLOSED
- 7
updated Jul 08, 2017
exDesign: numeric vs categorical variables and shrinkage method

#100 · created Feb 15, 2021 by gohr rna_seq
- CLOSED
- 0
updated Feb 23, 2021
Export counts as TPM in featcounts_deseq_mf.R

#9 · created May 18, 2016 by brandl rna_seq
- CLOSED
- 0
updated Jul 08, 2017
export TPM instead of FPKM tables

#14 · created May 19, 2017 by brandl rna_seq
- CLOSED
- 1
updated Jun 19, 2017
expression_explorer: harcoded Rscipt path

#67 · created Aug 15, 2019 by domingue rna_seq
- CLOSED
- 0
updated Aug 21, 2019
finish panther enrichment and reintegrate into cp_enrichment.R

#7 · created May 12, 2016 by brandl rna_seq
- CLOSED
- 2
updated Feb 20, 2020
Gene enrichment: script selects random genes if list too large

#98 · created Oct 07, 2020 by domingue rna_seq
- CLOSED
- 2
updated Oct 07, 2020
general: add multiQC report to fastqc_summary

#54 · created Jun 05, 2019 by herseman
- CLOSED
- 4
updated Dec 02, 2019
general: create customized docker files for individual analyses done with our ngs_tools scripts

#39 · created Feb 11, 2019 by herseman
- 3
updated Mar 14, 2019
general: create new human igenome for the Ensembl release 95

#49 · created Apr 05, 2019 by herseman
- CLOSED
- 1
updated Apr 05, 2019
general: create new human igenome for the Ensembl release 99

#89 · created Jun 24, 2020 by herseman
- CLOSED
- 0
updated Jun 24, 2020
general: create templates for R scripts and shinyApps and revise the dge_star_template

#50 · created May 10, 2019 by herseman
- 1
updated May 14, 2019
general: fix issues which occur due to updated R package versions

#48 · created Apr 03, 2019 by herseman
- CLOSED
- 1
updated Apr 09, 2019

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