Issues · bioinfo / ngs_tools

New issue

dge_workflow: expression_explorer app failed to load due to renamed/additional annotation columns

#91 · created Jul 10, 2020 by herseman rna_seq
- CLOSED
- 1
updated Jul 10, 2020
dge_workflow: fix lcf help

#74 · created Oct 22, 2019 by domingue rna_seq
- CLOSED
- 0
updated Dec 02, 2019
dge_workflow: future improvements

#75 · created Oct 22, 2019 by domingue rna_seq
- CLOSED
- 1
updated Jul 20, 2020
dge_workflow: include MA plot from ggpubr in dge report

#55 · created Jun 07, 2019 by herseman
- CLOSED
- 1
updated Jun 18, 2019
error in the plotDispEsts()

#2 · created Mar 07, 2016 by lakshman
- CLOSED
- 7
updated Jul 08, 2017
exDesign: numeric vs categorical variables and shrinkage method

#100 · created Feb 15, 2021 by gohr rna_seq
- CLOSED
- 0
updated Feb 23, 2021
Export counts as TPM in featcounts_deseq_mf.R

#9 · created May 18, 2016 by brandl rna_seq
- CLOSED
- 0
updated Jul 08, 2017
export TPM instead of FPKM tables

#14 · created May 19, 2017 by brandl rna_seq
- CLOSED
- 1
updated Jun 19, 2017
expression_explorer: harcoded Rscipt path

#67 · created Aug 15, 2019 by domingue rna_seq
- CLOSED
- 0
updated Aug 21, 2019
finish panther enrichment and reintegrate into cp_enrichment.R

#7 · created May 12, 2016 by brandl rna_seq
- CLOSED
- 2
updated Feb 20, 2020
Gene enrichment: script selects random genes if list too large

#98 · created Oct 07, 2020 by domingue rna_seq
- CLOSED
- 2
updated Oct 07, 2020
general: add multiQC report to fastqc_summary

#54 · created Jun 05, 2019 by herseman
- CLOSED
- 4
updated Dec 02, 2019
general: create new human igenome for the Ensembl release 95

#49 · created Apr 05, 2019 by herseman
- CLOSED
- 1
updated Apr 05, 2019
general: create new human igenome for the Ensembl release 99

#89 · created Jun 24, 2020 by herseman
- CLOSED
- 0
updated Jun 24, 2020
general: fix issues which occur due to updated R package versions

#48 · created Apr 03, 2019 by herseman
- CLOSED
- 1
updated Apr 09, 2019
general: save the actually used ngs_tools script in results data folder

#38 · created Feb 11, 2019 by herseman
- CLOSED
- 7
updated Mar 13, 2019
general: Test packrat for keep reproducible R environments

#53 · created Jun 04, 2019 by domingue
- CLOSED
- 4
updated Sep 16, 2019
general: think about using argparser instead of docopt for futur scripts

#52 · created Jun 03, 2019 by herseman
- CLOSED
- 6
updated May 26, 2020
general: track unsynchronized files on the cluster

#82 · created Feb 17, 2020 by herseman
- CLOSED
- 1
updated Feb 17, 2020
Grep error message crashes the script

#71 · created Sep 09, 2019 by domingue rna_seq
- CLOSED
- 0
updated Sep 09, 2019