Issues · bioinfo / ngs_tools

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ms_workflow: ms_limma.R returns error when no differentially abundant proteins were found

#41 · created Feb 14, 2019 by herseman mass_spec
- CLOSED
- 1
updated Feb 14, 2019
ms_workflow: Improvemnts 7 of 9 tasks completed

#28 · created Dec 07, 2018 by brandl mass_spec
- CLOSED
- 3
updated Dec 10, 2019
ms_workflow: handling of contaminations

#37 · created Feb 08, 2019 by herseman mass_spec
- CLOSED
- 1
updated Dec 10, 2019
ms_workflow: Add table with % of contaminants in the most abudant proteins

#68 · created Aug 26, 2019 by domingue mass_spec
- CLOSED
- 0
updated Aug 26, 2019
ms_workflow: add option to run analysis on raw intensities instead of LFQs

#30 · created Jan 15, 2019 by herseman
- CLOSED
- 0
updated Jan 15, 2019
ms_workflow: add % of NAs to results table

#61 · created Aug 09, 2019 by domingue mass_spec
- CLOSED
- 1
updated Aug 09, 2019
ms_workflow: add more explanations

#63 · created Aug 09, 2019 by domingue mass_spec
- CLOSED
- 1
updated Aug 09, 2019
ms_workflow: add intensities to results table

#60 · created Aug 09, 2019 by domingue mass_spec
- CLOSED
- 2
updated Aug 09, 2019
ms_workflow: add additional quality metrics to the differential abundance analysis output

#36 · created Feb 06, 2019 by herseman mass_spec
- CLOSED
- 3
updated Mar 08, 2019
MS worflow: improvements

#59 · created Jul 17, 2019 by domingue
- CLOSED
- 10
updated Aug 07, 2019
ms_worflow: bug in heatmap clustering

#69 · created Aug 27, 2019 by domingue mass_spec
- CLOSED
- 1
updated Aug 28, 2019
MS: How is imputation done?

#80 · created Jul 19, 2019 by domingue
- CLOSED
- 5
updated Jan 24, 2020
Move workflows to separate repositories

#87 · created Mar 19, 2020 by domingue
- CLOSED
- 4
updated Mar 20, 2020
make sure that exported tables contain double-normalized counts and not just size-normalized ones

#1 · created Feb 05, 2016 by brandl rna_seq
- CLOSED
- 2
updated Feb 12, 2019
Integrate tools to assess gc/3/5 bias, insert size, and capture efficiency

#11 · created Oct 11, 2016 by brandl rna_seq
- CLOSED
- 1
updated Feb 20, 2020
Implement renvs

#73 · created Sep 16, 2019 by domingue mass_spec rna_seq
- CLOSED
- 2
updated Feb 20, 2020
impl better means to access summary and quality statististcs

#18 · created May 30, 2017 by brandl
- CLOSED
- 0
updated Nov 09, 2017
iGenome permissions

#76 · created Nov 15, 2019 by domingue rna_seq
- CLOSED
- 0
updated Feb 20, 2020
Hardcoded pvalue in plot

#85 · created Mar 13, 2020 by domingue rna_seq
- CLOSED
- 5
updated Apr 15, 2020
gsea: improvement of description

#102 · created Apr 08, 2021 by gohr Bioinformatics Internal Non-rechargeable rna_seq
- CLOSED
- 1
updated Apr 08, 2021