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bioinfo
ngs_tools
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15
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88
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103
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Title
auto-detect strandedness when extracting count matrix
#16
· created
May 29, 2017
by
brandl
CLOSED
2
updated
Mar 27, 2020
Move workflows to separate repositories
#87
· created
Mar 19, 2020
by
domingue
CLOSED
4
updated
Mar 20, 2020
ms_workflow: ms_ms_prop and reorder information are missing for protein IDs without fasta_header information
#86
· created
Mar 17, 2020
by
herseman
mass_spec
CLOSED
1
updated
Mar 17, 2020
dge_workflow: collect_kallisto_data.R fails for paired-end data
#84
· created
Mar 12, 2020
by
herseman
rna_seq
CLOSED
2
updated
Mar 12, 2020
finish panther enrichment and reintegrate into cp_enrichment.R
#7
· created
May 12, 2016
by
brandl
rna_seq
CLOSED
2
updated
Feb 20, 2020
iGenome permissions
#76
· created
Nov 15, 2019
by
domingue
rna_seq
CLOSED
0
updated
Feb 20, 2020
Implement renvs
#73
· created
Sep 16, 2019
by
domingue
mass_spec
rna_seq
CLOSED
2
updated
Feb 20, 2020
update to more recent https://github.com/deeptools/deepTools/releases
#26
· created
Aug 16, 2018
by
brandl
2h
CLOSED
3
updated
Feb 20, 2020
report improvements
#25
· created
Nov 16, 2017
by
brandl
CLOSED
1
updated
Feb 20, 2020
Integrate tools to assess gc/3/5 bias, insert size, and capture efficiency
#11
· created
Oct 11, 2016
by
brandl
rna_seq
CLOSED
1
updated
Feb 20, 2020
ms_workflow: refine reorder information of protein groups
#83
· created
Feb 18, 2020
by
herseman
mass_spec
CLOSED
1
updated
Feb 18, 2020
general: track unsynchronized files on the cluster
#82
· created
Feb 17, 2020
by
herseman
CLOSED
1
updated
Feb 17, 2020
dge _workflow: analyze duplicates has a broken link to the plot of the model (dupRadar)
#81
· created
Feb 10, 2020
by
domingue
rna_seq
CLOSED
1
updated
Feb 10, 2020
MS: How is imputation done?
#80
· created
Jul 19, 2019
by
domingue
CLOSED
5
updated
Jan 24, 2020
conda and bioconductor version
#77
· created
Jan 14, 2020
by
domingue
CLOSED
9
updated
Jan 21, 2020
ms_workflow: Improvemnts
7 of 9 tasks completed
#28
· created
Dec 07, 2018
by
brandl
mass_spec
CLOSED
3
updated
Dec 10, 2019
ms_workflow: handling of contaminations
#37
· created
Feb 08, 2019
by
herseman
mass_spec
CLOSED
1
updated
Dec 10, 2019
try RNA-SeQC to get qc for bam files
#15
· created
May 19, 2017
by
brandl
CLOSED
1
updated
Dec 09, 2019
general: add multiQC report to fastqc_summary
#54
· created
Jun 05, 2019
by
herseman
CLOSED
4
updated
Dec 02, 2019
dge_workflow: fix lcf help
#74
· created
Oct 22, 2019
by
domingue
rna_seq
CLOSED
0
updated
Dec 02, 2019
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