Issues · bioinfo / ngs_tools · GitLab

ms_workflow: add more explanations

#63 · created Aug 09, 2019 by domingue mass_spec
- CLOSED
- 1
updated Aug 09, 2019
ms_workflow: replace PCA with plotly

#62 · created Aug 09, 2019 by domingue mass_spec
- CLOSED
- 2
updated Aug 09, 2019
ms_workflow: add % of NAs to results table

#61 · created Aug 09, 2019 by domingue mass_spec
- CLOSED
- 1
updated Aug 09, 2019
ms_workflow: add intensities to results table

#60 · created Aug 09, 2019 by domingue mass_spec
- CLOSED
- 2
updated Aug 09, 2019
MS worflow: improvements

#59 · created Jul 17, 2019 by domingue
- CLOSED
- 10
updated Aug 07, 2019
dge_workflow: error message because gtf_file did not exist

#58 · created Jun 27, 2019 by herseman
- CLOSED
- 1
updated Jun 27, 2019
dge workflow: add GTF an argument for differential gene expression

#57 · created Jun 20, 2019 by domingue rna_seq
- 2
updated Jun 28, 2019
dge_workflow: echoing R code in to Rscript not loading personal library packages

#56 · created Jun 19, 2019 by domingue rna_seq
- CLOSED
- 2
updated Jun 20, 2019
dge_workflow: include MA plot from ggpubr in dge report

#55 · created Jun 07, 2019 by herseman
- CLOSED
- 1
updated Jun 18, 2019
general: add multiQC report to fastqc_summary

#54 · created Jun 05, 2019 by herseman
- CLOSED
- 4
updated Dec 02, 2019
general: Test packrat for keep reproducible R environments

#53 · created Jun 04, 2019 by domingue
- CLOSED
- 4
updated Sep 16, 2019
general: think about using argparser instead of docopt for futur scripts

#52 · created Jun 03, 2019 by herseman
- CLOSED
- 6
updated May 26, 2020
dge_workflow: report number of reads per gene

#51 · created May 31, 2019 by herseman
- 14
updated Jun 30, 2020
general: create templates for R scripts and shinyApps and revise the dge_star_template

#50 · created May 10, 2019 by herseman
- 1
updated May 14, 2019
general: create new human igenome for the Ensembl release 95

#49 · created Apr 05, 2019 by herseman
- CLOSED
- 1
updated Apr 05, 2019
general: fix issues which occur due to updated R package versions

#48 · created Apr 03, 2019 by herseman
- CLOSED
- 1
updated Apr 09, 2019
sc_workflow: add shinyApp to explore Seurat clusterings

#47 · created Mar 20, 2019 by herseman
- CLOSED
- 5
updated Mar 22, 2019
sc_workflow: add additional gene information for the top50 most highly abundant features in `sc_quality_check.R`

#46 · created Mar 13, 2019 by herseman
- CLOSED
- 1
updated Mar 13, 2019
ms_workflow: move to peptide level

#45 · created Mar 07, 2019 by herseman
- 0
updated Dec 10, 2019
sc_workflow: write ShinyApp to explore metrics from the initial quality control

#44 · created Mar 04, 2019 by herseman
- CLOSED
- 3
updated Mar 20, 2019

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