Issues · bioinfo / ngs_tools

New issue

general: save the actually used ngs_tools script in results data folder

#38 · created Feb 11, 2019 by herseman
- CLOSED
- 7
updated Mar 13, 2019
general: Test packrat for keep reproducible R environments

#53 · created Jun 04, 2019 by domingue
- CLOSED
- 4
updated Sep 16, 2019
general: think about using argparser instead of docopt for futur scripts

#52 · created Jun 03, 2019 by herseman
- CLOSED
- 6
updated May 26, 2020
general: track unsynchronized files on the cluster

#82 · created Feb 17, 2020 by herseman
- CLOSED
- 1
updated Feb 17, 2020
Grep error message crashes the script

#71 · created Sep 09, 2019 by domingue rna_seq
- CLOSED
- 0
updated Sep 09, 2019
GSEA

#92 · created Aug 07, 2020 by domingue rna_seq
- CLOSED
- 5
updated Sep 23, 2020
GSEA: add option to use custom gene sets

#93 · created Sep 09, 2020 by domingue rna_seq
- CLOSED
- 1
updated Sep 09, 2020
gsea: better description

#99 · created Nov 12, 2020 by domingue rna_seq
- CLOSED
- 2
updated Nov 19, 2020
gsea: bug, hard-coded species

#94 · created Sep 15, 2020 by domingue rna_seq
- CLOSED
- 0
updated Sep 15, 2020
gsea: bug, in extra sets the first line is being read as header

#95 · created Sep 15, 2020 by domingue rna_seq
- CLOSED
- 0
updated Sep 15, 2020
gsea: fixing expression explorer

#103 · created Apr 08, 2021 by gohr Bioinformatics Internal Non-rechargeable rna_seq
- CLOSED
- 0
updated Apr 08, 2021
gsea: generate results for each contrast

#96 · created Sep 16, 2020 by domingue rna_seq
- CLOSED
- 1
updated Sep 23, 2020
GSEA: improve color code of KEGG pathways

#101 · created Mar 23, 2021 by gohr rna_seq
- CLOSED
- 0
updated Mar 23, 2021
gsea: improvement of description

#102 · created Apr 08, 2021 by gohr Bioinformatics Internal Non-rechargeable rna_seq
- CLOSED
- 1
updated Apr 08, 2021
gsea: improvments 2 of 4 tasks completed

#97 · created Sep 24, 2020 by domingue rna_seq
- 0
updated Oct 13, 2020
Hardcoded pvalue in plot

#85 · created Mar 13, 2020 by domingue rna_seq
- CLOSED
- 5
updated Apr 15, 2020
iGenome permissions

#76 · created Nov 15, 2019 by domingue rna_seq
- CLOSED
- 0
updated Feb 20, 2020
impl better means to access summary and quality statististcs

#18 · created May 30, 2017 by brandl
- CLOSED
- 0
updated Nov 09, 2017
Implement renvs

#73 · created Sep 16, 2019 by domingue mass_spec rna_seq
- CLOSED
- 2
updated Feb 20, 2020
Integrate tools to assess gc/3/5 bias, insert size, and capture efficiency

#11 · created Oct 11, 2016 by brandl rna_seq
- CLOSED
- 1
updated Feb 20, 2020