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  • bioinfo
  • ngs_tools
  • Issues

  • Open 15
  • Closed 88
  • All 103
New issue
  • Priority Created date Last updated Milestone due date Due date Popularity Label priority Manual Title
  • GSEA
    #92 · created Aug 07, 2020 by domingue   rna_seq
    • CLOSED
    • 5
    updated Sep 23, 2020
  • GSEA: add option to use custom gene sets
    #93 · created Sep 09, 2020 by domingue   rna_seq
    • CLOSED
    • 1
    updated Sep 09, 2020
  • gsea: better description
    #99 · created Nov 12, 2020 by domingue   rna_seq
    • CLOSED
    • 2
    updated Nov 19, 2020
  • gsea: bug, hard-coded species
    #94 · created Sep 15, 2020 by domingue   rna_seq
    • CLOSED
    • 0
    updated Sep 15, 2020
  • gsea: bug, in extra sets the first line is being read as header
    #95 · created Sep 15, 2020 by domingue   rna_seq
    • CLOSED
    • 0
    updated Sep 15, 2020
  • gsea: fixing expression explorer
    #103 · created Apr 08, 2021 by gohr   Bioinformatics Internal Non-rechargeable rna_seq
    • CLOSED
    • 0
    updated Apr 08, 2021
  • gsea: generate results for each contrast
    #96 · created Sep 16, 2020 by domingue   rna_seq
    • CLOSED
    • 1
    updated Sep 23, 2020
  • GSEA: improve color code of KEGG pathways
    #101 · created Mar 23, 2021 by gohr   rna_seq
    • CLOSED
    • 0
    updated Mar 23, 2021
  • gsea: improvement of description
    #102 · created Apr 08, 2021 by gohr   Bioinformatics Internal Non-rechargeable rna_seq
    • CLOSED
    • 1
    updated Apr 08, 2021
  • Hardcoded pvalue in plot
    #85 · created Mar 13, 2020 by domingue   rna_seq
    • CLOSED
    • 5
    updated Apr 15, 2020
  • iGenome permissions
    #76 · created Nov 15, 2019 by domingue   rna_seq
    • CLOSED
    • 0
    updated Feb 20, 2020
  • impl better means to access summary and quality statististcs
    #18 · created May 30, 2017 by brandl
    • CLOSED
    • 0
    updated Nov 09, 2017
  • Implement renvs
    #73 · created Sep 16, 2019 by domingue   mass_spec rna_seq
    • CLOSED
    • 2
    updated Feb 20, 2020
  • Integrate tools to assess gc/3/5 bias, insert size, and capture efficiency
    #11 · created Oct 11, 2016 by brandl   rna_seq
    • CLOSED
    • 1
    updated Feb 20, 2020
  • make sure that exported tables contain double-normalized counts and not just size-normalized ones
    #1 · created Feb 05, 2016 by brandl   rna_seq
    • CLOSED
    • 2
    updated Feb 12, 2019
  • Move workflows to separate repositories
    #87 · created Mar 19, 2020 by domingue
    • CLOSED
    • 4
    updated Mar 20, 2020
  • MS: How is imputation done?
    #80 · created Jul 19, 2019 by domingue
    • CLOSED
    • 5
    updated Jan 24, 2020
  • ms_worflow: bug in heatmap clustering
    #69 · created Aug 27, 2019 by domingue   mass_spec
    • CLOSED
    • 1
    updated Aug 28, 2019
  • MS worflow: improvements
    #59 · created Jul 17, 2019 by domingue
    • CLOSED
    • 10
    updated Aug 07, 2019
  • ms_workflow: add additional quality metrics to the differential abundance analysis output
    #36 · created Feb 06, 2019 by herseman   mass_spec
    • CLOSED
    • 3
    updated Mar 08, 2019
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