Issues · bioinfo / ngs_tools

New issue

GSEA

#92 · created Aug 07, 2020 by domingue rna_seq
- CLOSED
- 5
updated Sep 23, 2020
GSEA: add option to use custom gene sets

#93 · created Sep 09, 2020 by domingue rna_seq
- CLOSED
- 1
updated Sep 09, 2020
gsea: better description

#99 · created Nov 12, 2020 by domingue rna_seq
- CLOSED
- 2
updated Nov 19, 2020
gsea: bug, hard-coded species

#94 · created Sep 15, 2020 by domingue rna_seq
- CLOSED
- 0
updated Sep 15, 2020
gsea: bug, in extra sets the first line is being read as header

#95 · created Sep 15, 2020 by domingue rna_seq
- CLOSED
- 0
updated Sep 15, 2020
gsea: fixing expression explorer

#103 · created Apr 08, 2021 by gohr Bioinformatics Internal Non-rechargeable rna_seq
- CLOSED
- 0
updated Apr 08, 2021
gsea: generate results for each contrast

#96 · created Sep 16, 2020 by domingue rna_seq
- CLOSED
- 1
updated Sep 23, 2020
GSEA: improve color code of KEGG pathways

#101 · created Mar 23, 2021 by gohr rna_seq
- CLOSED
- 0
updated Mar 23, 2021
gsea: improvement of description

#102 · created Apr 08, 2021 by gohr Bioinformatics Internal Non-rechargeable rna_seq
- CLOSED
- 1
updated Apr 08, 2021
Hardcoded pvalue in plot

#85 · created Mar 13, 2020 by domingue rna_seq
- CLOSED
- 5
updated Apr 15, 2020
iGenome permissions

#76 · created Nov 15, 2019 by domingue rna_seq
- CLOSED
- 0
updated Feb 20, 2020
impl better means to access summary and quality statististcs

#18 · created May 30, 2017 by brandl
- CLOSED
- 0
updated Nov 09, 2017
Implement renvs

#73 · created Sep 16, 2019 by domingue mass_spec rna_seq
- CLOSED
- 2
updated Feb 20, 2020
Integrate tools to assess gc/3/5 bias, insert size, and capture efficiency

#11 · created Oct 11, 2016 by brandl rna_seq
- CLOSED
- 1
updated Feb 20, 2020
make sure that exported tables contain double-normalized counts and not just size-normalized ones

#1 · created Feb 05, 2016 by brandl rna_seq
- CLOSED
- 2
updated Feb 12, 2019
Move workflows to separate repositories

#87 · created Mar 19, 2020 by domingue
- CLOSED
- 4
updated Mar 20, 2020
MS: How is imputation done?

#80 · created Jul 19, 2019 by domingue
- CLOSED
- 5
updated Jan 24, 2020
ms_worflow: bug in heatmap clustering

#69 · created Aug 27, 2019 by domingue mass_spec
- CLOSED
- 1
updated Aug 28, 2019
MS worflow: improvements

#59 · created Jul 17, 2019 by domingue
- CLOSED
- 10
updated Aug 07, 2019
ms_workflow: add additional quality metrics to the differential abundance analysis output

#36 · created Feb 06, 2019 by herseman mass_spec
- CLOSED
- 3
updated Mar 08, 2019