Issues · bioinfo / ngs_tools

New issue

ms_workflow: Add table with % of contaminants in the most abudant proteins

#68 · created Aug 26, 2019 by domingue mass_spec
- CLOSED
- 0
updated Aug 26, 2019
ms_worflow: bug in heatmap clustering

#69 · created Aug 27, 2019 by domingue mass_spec
- CLOSED
- 1
updated Aug 28, 2019
cut delimeter breaks fastqc_summary.R

#70 · created Sep 09, 2019 by domingue rna_seq
- CLOSED
- 0
updated Sep 09, 2019
Changes in ggplot break boxplot in fastqc_summary.R

#72 · created Sep 09, 2019 by domingue rna_seq
- CLOSED
- 1
updated Sep 09, 2019
Grep error message crashes the script

#71 · created Sep 09, 2019 by domingue rna_seq
- CLOSED
- 0
updated Sep 09, 2019
general: Test packrat for keep reproducible R environments

#53 · created Jun 04, 2019 by domingue
- CLOSED
- 4
updated Sep 16, 2019
DEP installation on falcon - nc-config missing

#65 · created Aug 14, 2019 by domingue mass_spec
- CLOSED
- 1
updated Sep 17, 2019
use http://multiqc.info/ for qc reporting

#10 · created Jul 29, 2016 by brandl rna_seq
- CLOSED
- 1
updated Nov 18, 2019
dge_workflow: fix lcf help

#74 · created Oct 22, 2019 by domingue rna_seq
- CLOSED
- 0
updated Dec 02, 2019
general: add multiQC report to fastqc_summary

#54 · created Jun 05, 2019 by herseman
- CLOSED
- 4
updated Dec 02, 2019
try RNA-SeQC to get qc for bam files

#15 · created May 19, 2017 by brandl
- CLOSED
- 1
updated Dec 09, 2019
ms_workflow: handling of contaminations

#37 · created Feb 08, 2019 by herseman mass_spec
- CLOSED
- 1
updated Dec 10, 2019
ms_workflow: Improvemnts 7 of 9 tasks completed

#28 · created Dec 07, 2018 by brandl mass_spec
- CLOSED
- 3
updated Dec 10, 2019
conda and bioconductor version

#77 · created Jan 14, 2020 by domingue
- CLOSED
- 9
updated Jan 21, 2020
MS: How is imputation done?

#80 · created Jul 19, 2019 by domingue
- CLOSED
- 5
updated Jan 24, 2020
dge _workflow: analyze duplicates has a broken link to the plot of the model (dupRadar)

#81 · created Feb 10, 2020 by domingue rna_seq
- CLOSED
- 1
updated Feb 10, 2020
general: track unsynchronized files on the cluster

#82 · created Feb 17, 2020 by herseman
- CLOSED
- 1
updated Feb 17, 2020
ms_workflow: refine reorder information of protein groups

#83 · created Feb 18, 2020 by herseman mass_spec
- CLOSED
- 1
updated Feb 18, 2020
Integrate tools to assess gc/3/5 bias, insert size, and capture efficiency

#11 · created Oct 11, 2016 by brandl rna_seq
- CLOSED
- 1
updated Feb 20, 2020
report improvements

#25 · created Nov 16, 2017 by brandl
- CLOSED
- 1
updated Feb 20, 2020