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  • bioinfo
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  • Issues

  • Open 15
  • Closed 88
  • All 103
New issue
  • Priority Created date Last updated Milestone due date Due date Popularity Label priority Manual Title
  • ms_workflow: handling of contaminations
    #37 · created Feb 08, 2019 by herseman   mass_spec
    • CLOSED
    • 1
    updated Dec 10, 2019
  • ms_workflow: handling of technical replicates
    #40 · created Feb 13, 2019 by herseman   mass_spec
    • 2
    updated Dec 09, 2019
  • try RNA-SeQC to get qc for bam files
    #15 · created May 19, 2017 by brandl
    • CLOSED
    • 1
    updated Dec 09, 2019
  • general: add multiQC report to fastqc_summary
    #54 · created Jun 05, 2019 by herseman
    • CLOSED
    • 4
    updated Dec 02, 2019
  • dge_workflow: fix lcf help
    #74 · created Oct 22, 2019 by domingue   rna_seq
    • CLOSED
    • 0
    updated Dec 02, 2019
  • use http://multiqc.info/ for qc reporting
    #10 · created Jul 29, 2016 by brandl   rna_seq
    • CLOSED
    • 1
    updated Nov 18, 2019
  • DEP installation on falcon - nc-config missing
    #65 · created Aug 14, 2019 by domingue   mass_spec
    • CLOSED
    • 1
    updated Sep 17, 2019
  • general: Test packrat for keep reproducible R environments
    #53 · created Jun 04, 2019 by domingue
    • CLOSED
    • 4
    updated Sep 16, 2019
  • Grep error message crashes the script
    #71 · created Sep 09, 2019 by domingue   rna_seq
    • CLOSED
    • 0
    updated Sep 09, 2019
  • Changes in ggplot break boxplot in fastqc_summary.R
    #72 · created Sep 09, 2019 by domingue   rna_seq
    • CLOSED
    • 1
    updated Sep 09, 2019
  • cut delimeter breaks fastqc_summary.R
    #70 · created Sep 09, 2019 by domingue   rna_seq
    • CLOSED
    • 0
    updated Sep 09, 2019
  • ms_worflow: bug in heatmap clustering
    #69 · created Aug 27, 2019 by domingue   mass_spec
    • CLOSED
    • 1
    updated Aug 28, 2019
  • ms_workflow: Add table with % of contaminants in the most abudant proteins
    #68 · created Aug 26, 2019 by domingue   mass_spec
    • CLOSED
    • 0
    updated Aug 26, 2019
  • ms_workflow: improve the results heatmap   2 of 3 tasks completed
    #66 · created Aug 15, 2019 by domingue   mass_spec
    • 1
    updated Aug 23, 2019
  • expression_explorer: harcoded Rscipt path
    #67 · created Aug 15, 2019 by domingue   rna_seq
    • CLOSED
    • 0
    updated Aug 21, 2019
  • ms_workflow: QC improvments
    #64 · created Aug 09, 2019 by domingue   mass_spec
    • CLOSED
    • 1
    updated Aug 13, 2019
  • ms_workflow: replace PCA with plotly
    #62 · created Aug 09, 2019 by domingue   mass_spec
    • CLOSED
    • 2
    updated Aug 09, 2019
  • ms_workflow: add % of NAs to results table
    #61 · created Aug 09, 2019 by domingue   mass_spec
    • CLOSED
    • 1
    updated Aug 09, 2019
  • ms_workflow: add intensities to results table
    #60 · created Aug 09, 2019 by domingue   mass_spec
    • CLOSED
    • 2
    updated Aug 09, 2019
  • ms_workflow: add more explanations
    #63 · created Aug 09, 2019 by domingue   mass_spec
    • CLOSED
    • 1
    updated Aug 09, 2019
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