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bioinfo
ngs_tools
Issues
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15
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88
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103
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Title
ms_workflow: handling of contaminations
#37
· created
Feb 08, 2019
by
herseman
mass_spec
CLOSED
1
updated
Dec 10, 2019
ms_workflow: handling of technical replicates
#40
· created
Feb 13, 2019
by
herseman
mass_spec
2
updated
Dec 09, 2019
try RNA-SeQC to get qc for bam files
#15
· created
May 19, 2017
by
brandl
CLOSED
1
updated
Dec 09, 2019
general: add multiQC report to fastqc_summary
#54
· created
Jun 05, 2019
by
herseman
CLOSED
4
updated
Dec 02, 2019
dge_workflow: fix lcf help
#74
· created
Oct 22, 2019
by
domingue
rna_seq
CLOSED
0
updated
Dec 02, 2019
use http://multiqc.info/ for qc reporting
#10
· created
Jul 29, 2016
by
brandl
rna_seq
CLOSED
1
updated
Nov 18, 2019
DEP installation on falcon - nc-config missing
#65
· created
Aug 14, 2019
by
domingue
mass_spec
CLOSED
1
updated
Sep 17, 2019
general: Test packrat for keep reproducible R environments
#53
· created
Jun 04, 2019
by
domingue
CLOSED
4
updated
Sep 16, 2019
Grep error message crashes the script
#71
· created
Sep 09, 2019
by
domingue
rna_seq
CLOSED
0
updated
Sep 09, 2019
Changes in ggplot break boxplot in fastqc_summary.R
#72
· created
Sep 09, 2019
by
domingue
rna_seq
CLOSED
1
updated
Sep 09, 2019
cut delimeter breaks fastqc_summary.R
#70
· created
Sep 09, 2019
by
domingue
rna_seq
CLOSED
0
updated
Sep 09, 2019
ms_worflow: bug in heatmap clustering
#69
· created
Aug 27, 2019
by
domingue
mass_spec
CLOSED
1
updated
Aug 28, 2019
ms_workflow: Add table with % of contaminants in the most abudant proteins
#68
· created
Aug 26, 2019
by
domingue
mass_spec
CLOSED
0
updated
Aug 26, 2019
ms_workflow: improve the results heatmap
2 of 3 tasks completed
#66
· created
Aug 15, 2019
by
domingue
mass_spec
1
updated
Aug 23, 2019
expression_explorer: harcoded Rscipt path
#67
· created
Aug 15, 2019
by
domingue
rna_seq
CLOSED
0
updated
Aug 21, 2019
ms_workflow: QC improvments
#64
· created
Aug 09, 2019
by
domingue
mass_spec
CLOSED
1
updated
Aug 13, 2019
ms_workflow: replace PCA with plotly
#62
· created
Aug 09, 2019
by
domingue
mass_spec
CLOSED
2
updated
Aug 09, 2019
ms_workflow: add % of NAs to results table
#61
· created
Aug 09, 2019
by
domingue
mass_spec
CLOSED
1
updated
Aug 09, 2019
ms_workflow: add intensities to results table
#60
· created
Aug 09, 2019
by
domingue
mass_spec
CLOSED
2
updated
Aug 09, 2019
ms_workflow: add more explanations
#63
· created
Aug 09, 2019
by
domingue
mass_spec
CLOSED
1
updated
Aug 09, 2019
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