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bioinfo
ngs_tools
Issues
Open
15
Closed
88
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103
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Title
use http://multiqc.info/ for qc reporting
#10
· created
Jul 29, 2016
by
brandl
rna_seq
CLOSED
1
updated
Nov 18, 2019
DEP installation on falcon - nc-config missing
#65
· created
Aug 14, 2019
by
domingue
mass_spec
CLOSED
1
updated
Sep 17, 2019
general: Test packrat for keep reproducible R environments
#53
· created
Jun 04, 2019
by
domingue
CLOSED
4
updated
Sep 16, 2019
Grep error message crashes the script
#71
· created
Sep 09, 2019
by
domingue
rna_seq
CLOSED
0
updated
Sep 09, 2019
Changes in ggplot break boxplot in fastqc_summary.R
#72
· created
Sep 09, 2019
by
domingue
rna_seq
CLOSED
1
updated
Sep 09, 2019
cut delimeter breaks fastqc_summary.R
#70
· created
Sep 09, 2019
by
domingue
rna_seq
CLOSED
0
updated
Sep 09, 2019
ms_worflow: bug in heatmap clustering
#69
· created
Aug 27, 2019
by
domingue
mass_spec
CLOSED
1
updated
Aug 28, 2019
ms_workflow: Add table with % of contaminants in the most abudant proteins
#68
· created
Aug 26, 2019
by
domingue
mass_spec
CLOSED
0
updated
Aug 26, 2019
expression_explorer: harcoded Rscipt path
#67
· created
Aug 15, 2019
by
domingue
rna_seq
CLOSED
0
updated
Aug 21, 2019
ms_workflow: QC improvments
#64
· created
Aug 09, 2019
by
domingue
mass_spec
CLOSED
1
updated
Aug 13, 2019
ms_workflow: replace PCA with plotly
#62
· created
Aug 09, 2019
by
domingue
mass_spec
CLOSED
2
updated
Aug 09, 2019
ms_workflow: add % of NAs to results table
#61
· created
Aug 09, 2019
by
domingue
mass_spec
CLOSED
1
updated
Aug 09, 2019
ms_workflow: add intensities to results table
#60
· created
Aug 09, 2019
by
domingue
mass_spec
CLOSED
2
updated
Aug 09, 2019
ms_workflow: add more explanations
#63
· created
Aug 09, 2019
by
domingue
mass_spec
CLOSED
1
updated
Aug 09, 2019
MS worflow: improvements
#59
· created
Jul 17, 2019
by
domingue
CLOSED
10
updated
Aug 07, 2019
dge_workflow: error message because gtf_file did not exist
#58
· created
Jun 27, 2019
by
herseman
CLOSED
1
updated
Jun 27, 2019
dge_workflow: echoing R code in to Rscript not loading personal library packages
#56
· created
Jun 19, 2019
by
domingue
rna_seq
CLOSED
2
updated
Jun 20, 2019
dge_workflow: include MA plot from ggpubr in dge report
#55
· created
Jun 07, 2019
by
herseman
CLOSED
1
updated
Jun 18, 2019
general: fix issues which occur due to updated R package versions
#48
· created
Apr 03, 2019
by
herseman
CLOSED
1
updated
Apr 09, 2019
general: create new human igenome for the Ensembl release 95
#49
· created
Apr 05, 2019
by
herseman
CLOSED
1
updated
Apr 05, 2019
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