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  • bioinfo
  • ngs_tools
  • Issues

  • Open 15
  • Closed 88
  • All 103
New issue
  • Priority Created date Last updated Milestone due date Due date Popularity Label priority Manual Title
  • use http://multiqc.info/ for qc reporting
    #10 · created Jul 29, 2016 by brandl   rna_seq
    • CLOSED
    • 1
    updated Nov 18, 2019
  • DEP installation on falcon - nc-config missing
    #65 · created Aug 14, 2019 by domingue   mass_spec
    • CLOSED
    • 1
    updated Sep 17, 2019
  • general: Test packrat for keep reproducible R environments
    #53 · created Jun 04, 2019 by domingue
    • CLOSED
    • 4
    updated Sep 16, 2019
  • Grep error message crashes the script
    #71 · created Sep 09, 2019 by domingue   rna_seq
    • CLOSED
    • 0
    updated Sep 09, 2019
  • Changes in ggplot break boxplot in fastqc_summary.R
    #72 · created Sep 09, 2019 by domingue   rna_seq
    • CLOSED
    • 1
    updated Sep 09, 2019
  • cut delimeter breaks fastqc_summary.R
    #70 · created Sep 09, 2019 by domingue   rna_seq
    • CLOSED
    • 0
    updated Sep 09, 2019
  • ms_worflow: bug in heatmap clustering
    #69 · created Aug 27, 2019 by domingue   mass_spec
    • CLOSED
    • 1
    updated Aug 28, 2019
  • ms_workflow: Add table with % of contaminants in the most abudant proteins
    #68 · created Aug 26, 2019 by domingue   mass_spec
    • CLOSED
    • 0
    updated Aug 26, 2019
  • expression_explorer: harcoded Rscipt path
    #67 · created Aug 15, 2019 by domingue   rna_seq
    • CLOSED
    • 0
    updated Aug 21, 2019
  • ms_workflow: QC improvments
    #64 · created Aug 09, 2019 by domingue   mass_spec
    • CLOSED
    • 1
    updated Aug 13, 2019
  • ms_workflow: replace PCA with plotly
    #62 · created Aug 09, 2019 by domingue   mass_spec
    • CLOSED
    • 2
    updated Aug 09, 2019
  • ms_workflow: add % of NAs to results table
    #61 · created Aug 09, 2019 by domingue   mass_spec
    • CLOSED
    • 1
    updated Aug 09, 2019
  • ms_workflow: add intensities to results table
    #60 · created Aug 09, 2019 by domingue   mass_spec
    • CLOSED
    • 2
    updated Aug 09, 2019
  • ms_workflow: add more explanations
    #63 · created Aug 09, 2019 by domingue   mass_spec
    • CLOSED
    • 1
    updated Aug 09, 2019
  • MS worflow: improvements
    #59 · created Jul 17, 2019 by domingue
    • CLOSED
    • 10
    updated Aug 07, 2019
  • dge_workflow: error message because gtf_file did not exist
    #58 · created Jun 27, 2019 by herseman
    • CLOSED
    • 1
    updated Jun 27, 2019
  • dge_workflow: echoing R code in to Rscript not loading personal library packages
    #56 · created Jun 19, 2019 by domingue   rna_seq
    • CLOSED
    • 2
    updated Jun 20, 2019
  • dge_workflow: include MA plot from ggpubr in dge report
    #55 · created Jun 07, 2019 by herseman
    • CLOSED
    • 1
    updated Jun 18, 2019
  • general: fix issues which occur due to updated R package versions
    #48 · created Apr 03, 2019 by herseman
    • CLOSED
    • 1
    updated Apr 09, 2019
  • general: create new human igenome for the Ensembl release 95
    #49 · created Apr 05, 2019 by herseman
    • CLOSED
    • 1
    updated Apr 05, 2019
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