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bioinfo
ngs_tools
Issues
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15
Closed
88
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103
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Title
sc_workflow: add script for the calculation of diffusion map and pseudo time using the `destiny` package
#43
· created
Mar 01, 2019
by
herseman
CLOSED
2
updated
Mar 05, 2019
sc_workflow: update sc_quality_check.R
#42
· created
Feb 28, 2019
by
herseman
CLOSED
4
updated
Mar 20, 2019
ms_workflow: ms_limma.R returns error when no differentially abundant proteins were found
#41
· created
Feb 14, 2019
by
herseman
mass_spec
CLOSED
1
updated
Feb 14, 2019
ms_workflow: handling of technical replicates
#40
· created
Feb 13, 2019
by
herseman
mass_spec
2
updated
Dec 09, 2019
general: create customized docker files for individual analyses done with our ngs_tools scripts
#39
· created
Feb 11, 2019
by
herseman
3
updated
Mar 14, 2019
general: save the actually used ngs_tools script in results data folder
#38
· created
Feb 11, 2019
by
herseman
CLOSED
7
updated
Mar 13, 2019
ms_workflow: handling of contaminations
#37
· created
Feb 08, 2019
by
herseman
mass_spec
CLOSED
1
updated
Dec 10, 2019
ms_workflow: add additional quality metrics to the differential abundance analysis output
#36
· created
Feb 06, 2019
by
herseman
mass_spec
CLOSED
3
updated
Mar 08, 2019
sc_workflow: write single script for Seurat workflow with tested and approved settings
#35
· created
Jan 16, 2019
by
herseman
3
updated
Mar 22, 2019
ms_workflow: report differential abundance proteins along with the identification type information as well as additional protein information
#34
· created
Jan 15, 2019
by
herseman
CLOSED
1
updated
Feb 01, 2019
ms_workflow: report settings from MaxQuant log file
#33
· created
Jan 15, 2019
by
herseman
mass_spec
CLOSED
2
updated
Feb 12, 2019
ms_workflow: aggregate protein isoforms data on gene level
#32
· created
Jan 15, 2019
by
herseman
mass_spec
0
updated
Feb 08, 2019
ms_workflow: report number of peptides (unique and razor peptides) for each protein group
#31
· created
Jan 15, 2019
by
herseman
mass_spec
2
updated
Feb 08, 2019
ms_workflow: add option to run analysis on raw intensities instead of LFQs
#30
· created
Jan 15, 2019
by
herseman
CLOSED
0
updated
Jan 15, 2019
revise limma workflow for mass spec data
#29
· created
Jan 10, 2019
by
herseman
CLOSED
1
updated
Jan 11, 2019
ms_workflow: Improvemnts
7 of 9 tasks completed
#28
· created
Dec 07, 2018
by
brandl
mass_spec
CLOSED
3
updated
Dec 10, 2019
new ticket
#27
· created
Nov 15, 2018
by
brandl
3h
CLOSED
3
updated
Dec 07, 2018
update to more recent https://github.com/deeptools/deepTools/releases
#26
· created
Aug 16, 2018
by
brandl
2h
CLOSED
3
updated
Feb 20, 2020
report improvements
#25
· created
Nov 16, 2017
by
brandl
CLOSED
1
updated
Feb 20, 2020
DESeq2 check current clustering method
#24
· created
Nov 15, 2017
by
herseman
0
updated
Nov 29, 2018
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