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  • bioinfo
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  • Issues

  • Open 15
  • Closed 88
  • All 103
New issue
  • Priority Created date Last updated Milestone due date Due date Popularity Label priority Manual Title
  • ms_workflow: add intensities to results table
    #60 · created Aug 09, 2019 by domingue   mass_spec
    • CLOSED
    • 2
    updated Aug 09, 2019
  • ms_workflow: add more explanations
    #63 · created Aug 09, 2019 by domingue   mass_spec
    • CLOSED
    • 1
    updated Aug 09, 2019
  • ms_workflow: add % of NAs to results table
    #61 · created Aug 09, 2019 by domingue   mass_spec
    • CLOSED
    • 1
    updated Aug 09, 2019
  • ms_workflow: add option to run analysis on raw intensities instead of LFQs
    #30 · created Jan 15, 2019 by herseman
    • CLOSED
    • 0
    updated Jan 15, 2019
  • ms_workflow: Add table with % of contaminants in the most abudant proteins
    #68 · created Aug 26, 2019 by domingue   mass_spec
    • CLOSED
    • 0
    updated Aug 26, 2019
  • ms_workflow: handling of contaminations
    #37 · created Feb 08, 2019 by herseman   mass_spec
    • CLOSED
    • 1
    updated Dec 10, 2019
  • ms_workflow: Improvemnts   7 of 9 tasks completed
    #28 · created Dec 07, 2018 by brandl   mass_spec
    • CLOSED
    • 3
    updated Dec 10, 2019
  • ms_workflow: ms_limma.R returns error when no differentially abundant proteins were found
    #41 · created Feb 14, 2019 by herseman   mass_spec
    • CLOSED
    • 1
    updated Feb 14, 2019
  • ms_workflow: ms_ms_prop and reorder information are missing for protein IDs without fasta_header information
    #86 · created Mar 17, 2020 by herseman   mass_spec
    • CLOSED
    • 1
    updated Mar 17, 2020
  • ms_workflow: QC improvments
    #64 · created Aug 09, 2019 by domingue   mass_spec
    • CLOSED
    • 1
    updated Aug 13, 2019
  • ms_workflow: refine reorder information of protein groups
    #83 · created Feb 18, 2020 by herseman   mass_spec
    • CLOSED
    • 1
    updated Feb 18, 2020
  • ms_workflow: replace PCA with plotly
    #62 · created Aug 09, 2019 by domingue   mass_spec
    • CLOSED
    • 2
    updated Aug 09, 2019
  • ms_workflow: report differential abundance proteins along with the identification type information as well as additional protein information
    #34 · created Jan 15, 2019 by herseman
    • CLOSED
    • 1
    updated Feb 01, 2019
  • ms_workflow: report settings from MaxQuant log file
    #33 · created Jan 15, 2019 by herseman   mass_spec
    • CLOSED
    • 2
    updated Feb 12, 2019
  • new ticket
    #27 · created Nov 15, 2018 by brandl   3h
    • CLOSED
    • 3
    updated Dec 07, 2018
  • report improvements
    #25 · created Nov 16, 2017 by brandl
    • CLOSED
    • 1
    updated Feb 20, 2020
  • revise limma workflow for mass spec data
    #29 · created Jan 10, 2019 by herseman
    • CLOSED
    • 1
    updated Jan 11, 2019
  • sc_workflow: add additional gene information for the top50 most highly abundant features in `sc_quality_check.R`
    #46 · created Mar 13, 2019 by herseman
    • CLOSED
    • 1
    updated Mar 13, 2019
  • sc_workflow: add script for the calculation of diffusion map and pseudo time using the `destiny` package
    #43 · created Mar 01, 2019 by herseman
    • CLOSED
    • 2
    updated Mar 05, 2019
  • sc_workflow: add shinyApp to explore Seurat clusterings
    #47 · created Mar 20, 2019 by herseman
    • CLOSED
    • 5
    updated Mar 22, 2019
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