Issues · bioinfo / ngs_tools

New issue

update to more recent https://github.com/deeptools/deepTools/releases

#26 · created Aug 16, 2018 by brandl 2h
- CLOSED
- 3
updated Feb 20, 2020
Implement renvs

#73 · created Sep 16, 2019 by domingue mass_spec rna_seq
- CLOSED
- 2
updated Feb 20, 2020
iGenome permissions

#76 · created Nov 15, 2019 by domingue rna_seq
- CLOSED
- 0
updated Feb 20, 2020
finish panther enrichment and reintegrate into cp_enrichment.R

#7 · created May 12, 2016 by brandl rna_seq
- CLOSED
- 2
updated Feb 20, 2020
dge_workflow: collect_kallisto_data.R fails for paired-end data

#84 · created Mar 12, 2020 by herseman rna_seq
- CLOSED
- 2
updated Mar 12, 2020
ms_workflow: ms_ms_prop and reorder information are missing for protein IDs without fasta_header information

#86 · created Mar 17, 2020 by herseman mass_spec
- CLOSED
- 1
updated Mar 17, 2020
Move workflows to separate repositories

#87 · created Mar 19, 2020 by domingue
- CLOSED
- 4
updated Mar 20, 2020
auto-detect strandedness when extracting count matrix

#16 · created May 29, 2017 by brandl
- CLOSED
- 2
updated Mar 27, 2020
Hardcoded pvalue in plot

#85 · created Mar 13, 2020 by domingue rna_seq
- CLOSED
- 5
updated Apr 15, 2020
consider to use alpha for more correct p_adjustment

#23 · created Nov 14, 2017 by brandl
- CLOSED
- 5
updated May 14, 2020
general: think about using argparser instead of docopt for futur scripts

#52 · created Jun 03, 2019 by herseman
- CLOSED
- 6
updated May 26, 2020
general: create new human igenome for the Ensembl release 99

#89 · created Jun 24, 2020 by herseman
- CLOSED
- 0
updated Jun 24, 2020
argparser error when --bam_files is the last optional argument

#90 · created Jul 01, 2020 by domingue rna_seq
- CLOSED
- 4
updated Jul 01, 2020
Create stable conda enviroment for Single cell analysis conda on falcon

#78 · created Jan 16, 2020 by domingue
- CLOSED
- 11
updated Jul 08, 2020
dge_workflow: expression_explorer app failed to load due to renamed/additional annotation columns

#91 · created Jul 10, 2020 by herseman rna_seq
- CLOSED
- 1
updated Jul 10, 2020
updating ms_workflow

#79 · created Jan 23, 2020 by herseman mass_spec
- CLOSED
- 14
updated Jul 13, 2020
dge_workflow: future improvements

#75 · created Oct 22, 2019 by domingue rna_seq
- CLOSED
- 1
updated Jul 20, 2020
GSEA: add option to use custom gene sets

#93 · created Sep 09, 2020 by domingue rna_seq
- CLOSED
- 1
updated Sep 09, 2020
gsea: bug, hard-coded species

#94 · created Sep 15, 2020 by domingue rna_seq
- CLOSED
- 0
updated Sep 15, 2020
gsea: bug, in extra sets the first line is being read as header

#95 · created Sep 15, 2020 by domingue rna_seq
- CLOSED
- 0
updated Sep 15, 2020