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bioinfo
ngs_tools
Issues
Open
15
Closed
88
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103
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Last updated
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Title
MS worflow: improvements
#59
· created
Jul 17, 2019
by
domingue
CLOSED
10
updated
Aug 07, 2019
dge workflow: add GTF an argument for differential gene expression
#57
· created
Jun 20, 2019
by
domingue
rna_seq
2
updated
Jun 28, 2019
dge_workflow: error message because gtf_file did not exist
#58
· created
Jun 27, 2019
by
herseman
CLOSED
1
updated
Jun 27, 2019
dge_workflow: echoing R code in to Rscript not loading personal library packages
#56
· created
Jun 19, 2019
by
domingue
rna_seq
CLOSED
2
updated
Jun 20, 2019
dge_workflow: include MA plot from ggpubr in dge report
#55
· created
Jun 07, 2019
by
herseman
CLOSED
1
updated
Jun 18, 2019
general: create templates for R scripts and shinyApps and revise the dge_star_template
#50
· created
May 10, 2019
by
herseman
1
updated
May 14, 2019
general: fix issues which occur due to updated R package versions
#48
· created
Apr 03, 2019
by
herseman
CLOSED
1
updated
Apr 09, 2019
general: create new human igenome for the Ensembl release 95
#49
· created
Apr 05, 2019
by
herseman
CLOSED
1
updated
Apr 05, 2019
sc_workflow: add shinyApp to explore Seurat clusterings
#47
· created
Mar 20, 2019
by
herseman
CLOSED
5
updated
Mar 22, 2019
sc_workflow: write single script for Seurat workflow with tested and approved settings
#35
· created
Jan 16, 2019
by
herseman
3
updated
Mar 22, 2019
sc_workflow: update sc_quality_check.R
#42
· created
Feb 28, 2019
by
herseman
CLOSED
4
updated
Mar 20, 2019
sc_workflow: write ShinyApp to explore metrics from the initial quality control
#44
· created
Mar 04, 2019
by
herseman
CLOSED
3
updated
Mar 20, 2019
general: create customized docker files for individual analyses done with our ngs_tools scripts
#39
· created
Feb 11, 2019
by
herseman
3
updated
Mar 14, 2019
general: save the actually used ngs_tools script in results data folder
#38
· created
Feb 11, 2019
by
herseman
CLOSED
7
updated
Mar 13, 2019
sc_workflow: add additional gene information for the top50 most highly abundant features in `sc_quality_check.R`
#46
· created
Mar 13, 2019
by
herseman
CLOSED
1
updated
Mar 13, 2019
ms_workflow: add additional quality metrics to the differential abundance analysis output
#36
· created
Feb 06, 2019
by
herseman
mass_spec
CLOSED
3
updated
Mar 08, 2019
better handling of outliers
#17
· created
May 30, 2017
by
brandl
CLOSED
0
updated
Mar 07, 2019
Change bam_qc to report multi/single mapper proportions relative to number of aligned reads.
#13
· created
May 18, 2017
by
brandl
CLOSED
0
updated
Mar 07, 2019
add frip statistic to cs-workflow
#5
· created
Mar 18, 2016
by
brandl
CLOSED
1
updated
Mar 07, 2019
sc_workflow: add script for the calculation of diffusion map and pseudo time using the `destiny` package
#43
· created
Mar 01, 2019
by
herseman
CLOSED
2
updated
Mar 05, 2019
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