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bioinfo
ngs_tools
Issues
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15
Closed
88
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103
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Title
sc_workflow: add shinyApp to explore Seurat clusterings
#47
· created
Mar 20, 2019
by
herseman
CLOSED
5
updated
Mar 22, 2019
sc_workflow: update sc_quality_check.R
#42
· created
Feb 28, 2019
by
herseman
CLOSED
4
updated
Mar 20, 2019
sc_workflow: write ShinyApp to explore metrics from the initial quality control
#44
· created
Mar 04, 2019
by
herseman
CLOSED
3
updated
Mar 20, 2019
general: save the actually used ngs_tools script in results data folder
#38
· created
Feb 11, 2019
by
herseman
CLOSED
7
updated
Mar 13, 2019
sc_workflow: add additional gene information for the top50 most highly abundant features in `sc_quality_check.R`
#46
· created
Mar 13, 2019
by
herseman
CLOSED
1
updated
Mar 13, 2019
ms_workflow: add additional quality metrics to the differential abundance analysis output
#36
· created
Feb 06, 2019
by
herseman
mass_spec
CLOSED
3
updated
Mar 08, 2019
better handling of outliers
#17
· created
May 30, 2017
by
brandl
CLOSED
0
updated
Mar 07, 2019
Change bam_qc to report multi/single mapper proportions relative to number of aligned reads.
#13
· created
May 18, 2017
by
brandl
CLOSED
0
updated
Mar 07, 2019
add frip statistic to cs-workflow
#5
· created
Mar 18, 2016
by
brandl
CLOSED
1
updated
Mar 07, 2019
sc_workflow: add script for the calculation of diffusion map and pseudo time using the `destiny` package
#43
· created
Mar 01, 2019
by
herseman
CLOSED
2
updated
Mar 05, 2019
ms_workflow: ms_limma.R returns error when no differentially abundant proteins were found
#41
· created
Feb 14, 2019
by
herseman
mass_spec
CLOSED
1
updated
Feb 14, 2019
ms_workflow: report settings from MaxQuant log file
#33
· created
Jan 15, 2019
by
herseman
mass_spec
CLOSED
2
updated
Feb 12, 2019
make sure that exported tables contain double-normalized counts and not just size-normalized ones
#1
· created
Feb 05, 2016
by
brandl
rna_seq
CLOSED
2
updated
Feb 12, 2019
ms_workflow: report differential abundance proteins along with the identification type information as well as additional protein information
#34
· created
Jan 15, 2019
by
herseman
CLOSED
1
updated
Feb 01, 2019
ms_workflow: add option to run analysis on raw intensities instead of LFQs
#30
· created
Jan 15, 2019
by
herseman
CLOSED
0
updated
Jan 15, 2019
revise limma workflow for mass spec data
#29
· created
Jan 10, 2019
by
herseman
CLOSED
1
updated
Jan 11, 2019
new ticket
#27
· created
Nov 15, 2018
by
brandl
3h
CLOSED
3
updated
Dec 07, 2018
write shiny app (results relative local app) for dge data
#22
· created
Nov 09, 2017
by
herseman
CLOSED
0
updated
Jan 19, 2018
use common q-score color scale for enrichment plots in cp_enrichment.R
#19
· created
Jul 19, 2017
by
brandl
CLOSED
0
updated
Nov 09, 2017
Add groupGo to cp_enrichment
#4
· created
Mar 16, 2016
by
brandl
CLOSED
1
updated
Nov 09, 2017
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