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bioinfo
ngs_tools
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15
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88
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103
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Title
consider to use alpha for more correct p_adjustment
#23
· created
Nov 14, 2017
by
brandl
CLOSED
5
updated
May 14, 2020
write shiny app (results relative local app) for dge data
#22
· created
Nov 09, 2017
by
herseman
CLOSED
0
updated
Jan 19, 2018
run kallisto parallel to STAR
#21
· created
Nov 09, 2017
by
herseman
0
updated
Nov 09, 2017
report proportion of multi-mappers in STAR report
#20
· created
Nov 09, 2017
by
herseman
0
updated
Nov 16, 2017
use common q-score color scale for enrichment plots in cp_enrichment.R
#19
· created
Jul 19, 2017
by
brandl
CLOSED
0
updated
Nov 09, 2017
impl better means to access summary and quality statististcs
#18
· created
May 30, 2017
by
brandl
CLOSED
0
updated
Nov 09, 2017
better handling of outliers
#17
· created
May 30, 2017
by
brandl
CLOSED
0
updated
Mar 07, 2019
auto-detect strandedness when extracting count matrix
#16
· created
May 29, 2017
by
brandl
CLOSED
2
updated
Mar 27, 2020
try RNA-SeQC to get qc for bam files
#15
· created
May 19, 2017
by
brandl
CLOSED
1
updated
Dec 09, 2019
export TPM instead of FPKM tables
#14
· created
May 19, 2017
by
brandl
rna_seq
CLOSED
1
updated
Jun 19, 2017
Change bam_qc to report multi/single mapper proportions relative to number of aligned reads.
#13
· created
May 18, 2017
by
brandl
CLOSED
0
updated
Mar 07, 2019
Add option to perform diffex-test in mf_feat_counts.R using fc-cutoff > 0.
#12
· created
Apr 10, 2017
by
brandl
rna_seq
CLOSED
2
updated
Jun 19, 2017
Integrate tools to assess gc/3/5 bias, insert size, and capture efficiency
#11
· created
Oct 11, 2016
by
brandl
rna_seq
CLOSED
1
updated
Feb 20, 2020
use http://multiqc.info/ for qc reporting
#10
· created
Jul 29, 2016
by
brandl
rna_seq
CLOSED
1
updated
Nov 18, 2019
Export counts as TPM in featcounts_deseq_mf.R
#9
· created
May 18, 2016
by
brandl
rna_seq
CLOSED
0
updated
Jul 08, 2017
create tool to create igv session file list of bam files
#8
· created
May 14, 2016
by
brandl
rna_seq
CLOSED
1
updated
Jul 08, 2017
finish panther enrichment and reintegrate into cp_enrichment.R
#7
· created
May 12, 2016
by
brandl
rna_seq
CLOSED
2
updated
Feb 20, 2020
Add pcr duplication analysis for rna-seq workflow
#6
· created
Apr 22, 2016
by
brandl
rna_seq
CLOSED
0
updated
Nov 09, 2017
add frip statistic to cs-workflow
#5
· created
Mar 18, 2016
by
brandl
CLOSED
1
updated
Mar 07, 2019
Add groupGo to cp_enrichment
#4
· created
Mar 16, 2016
by
brandl
CLOSED
1
updated
Nov 09, 2017
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