Issues · bioinfo / ngs_tools

New issue

add frip statistic to cs-workflow

#5 · created Mar 18, 2016 by brandl
- CLOSED
- 1
updated Mar 07, 2019
Add groupGo to cp_enrichment

#4 · created Mar 16, 2016 by brandl
- CLOSED
- 1
updated Nov 09, 2017
Add option to perform diffex-test in mf_feat_counts.R using fc-cutoff > 0.

#12 · created Apr 10, 2017 by brandl rna_seq
- CLOSED
- 2
updated Jun 19, 2017
Add pcr duplication analysis for rna-seq workflow

#6 · created Apr 22, 2016 by brandl rna_seq
- CLOSED
- 0
updated Nov 09, 2017
argparser error when --bam_files is the last optional argument

#90 · created Jul 01, 2020 by domingue rna_seq
- CLOSED
- 4
updated Jul 01, 2020
auto-detect strandedness when extracting count matrix

#16 · created May 29, 2017 by brandl
- CLOSED
- 2
updated Mar 27, 2020
better handling of outliers

#17 · created May 30, 2017 by brandl
- CLOSED
- 0
updated Mar 07, 2019
Change bam_qc to report multi/single mapper proportions relative to number of aligned reads.

#13 · created May 18, 2017 by brandl
- CLOSED
- 0
updated Mar 07, 2019
Changes in ggplot break boxplot in fastqc_summary.R

#72 · created Sep 09, 2019 by domingue rna_seq
- CLOSED
- 1
updated Sep 09, 2019
conda and bioconductor version

#77 · created Jan 14, 2020 by domingue
- CLOSED
- 9
updated Jan 21, 2020
consider to use alpha for more correct p_adjustment

#23 · created Nov 14, 2017 by brandl
- CLOSED
- 5
updated May 14, 2020
couldn't export the bitr function in clusterprofiler

#3 · created Mar 08, 2016 by lakshman
- CLOSED
- 6
updated Jul 08, 2017
Create stable conda enviroment for Single cell analysis conda on falcon

#78 · created Jan 16, 2020 by domingue
- CLOSED
- 11
updated Jul 08, 2020
create tool to create igv session file list of bam files

#8 · created May 14, 2016 by brandl rna_seq
- CLOSED
- 1
updated Jul 08, 2017
cut delimeter breaks fastqc_summary.R

#70 · created Sep 09, 2019 by domingue rna_seq
- CLOSED
- 0
updated Sep 09, 2019
DEP installation on falcon - nc-config missing

#65 · created Aug 14, 2019 by domingue mass_spec
- CLOSED
- 1
updated Sep 17, 2019
DESeq2 check current clustering method

#24 · created Nov 15, 2017 by herseman
- 0
updated Nov 29, 2018
dge workflow: add GTF an argument for differential gene expression

#57 · created Jun 20, 2019 by domingue rna_seq
- 2
updated Jun 28, 2019
dge _workflow: analyze duplicates has a broken link to the plot of the model (dupRadar)

#81 · created Feb 10, 2020 by domingue rna_seq
- CLOSED
- 1
updated Feb 10, 2020
dge_workflow: collect_kallisto_data.R fails for paired-end data

#84 · created Mar 12, 2020 by herseman rna_seq
- CLOSED
- 2
updated Mar 12, 2020