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bioinfo
ngs_tools
Issues
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15
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88
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103
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Title
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Last updated
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Title
add frip statistic to cs-workflow
#5
· created
Mar 18, 2016
by
brandl
CLOSED
1
updated
Mar 07, 2019
Add groupGo to cp_enrichment
#4
· created
Mar 16, 2016
by
brandl
CLOSED
1
updated
Nov 09, 2017
Add option to perform diffex-test in mf_feat_counts.R using fc-cutoff > 0.
#12
· created
Apr 10, 2017
by
brandl
rna_seq
CLOSED
2
updated
Jun 19, 2017
Add pcr duplication analysis for rna-seq workflow
#6
· created
Apr 22, 2016
by
brandl
rna_seq
CLOSED
0
updated
Nov 09, 2017
argparser error when --bam_files is the last optional argument
#90
· created
Jul 01, 2020
by
domingue
rna_seq
CLOSED
4
updated
Jul 01, 2020
auto-detect strandedness when extracting count matrix
#16
· created
May 29, 2017
by
brandl
CLOSED
2
updated
Mar 27, 2020
better handling of outliers
#17
· created
May 30, 2017
by
brandl
CLOSED
0
updated
Mar 07, 2019
Change bam_qc to report multi/single mapper proportions relative to number of aligned reads.
#13
· created
May 18, 2017
by
brandl
CLOSED
0
updated
Mar 07, 2019
Changes in ggplot break boxplot in fastqc_summary.R
#72
· created
Sep 09, 2019
by
domingue
rna_seq
CLOSED
1
updated
Sep 09, 2019
conda and bioconductor version
#77
· created
Jan 14, 2020
by
domingue
CLOSED
9
updated
Jan 21, 2020
consider to use alpha for more correct p_adjustment
#23
· created
Nov 14, 2017
by
brandl
CLOSED
5
updated
May 14, 2020
couldn't export the bitr function in clusterprofiler
#3
· created
Mar 08, 2016
by
lakshman
CLOSED
6
updated
Jul 08, 2017
Create stable conda enviroment for Single cell analysis conda on falcon
#78
· created
Jan 16, 2020
by
domingue
CLOSED
11
updated
Jul 08, 2020
create tool to create igv session file list of bam files
#8
· created
May 14, 2016
by
brandl
rna_seq
CLOSED
1
updated
Jul 08, 2017
cut delimeter breaks fastqc_summary.R
#70
· created
Sep 09, 2019
by
domingue
rna_seq
CLOSED
0
updated
Sep 09, 2019
DEP installation on falcon - nc-config missing
#65
· created
Aug 14, 2019
by
domingue
mass_spec
CLOSED
1
updated
Sep 17, 2019
DESeq2 check current clustering method
#24
· created
Nov 15, 2017
by
herseman
0
updated
Nov 29, 2018
dge workflow: add GTF an argument for differential gene expression
#57
· created
Jun 20, 2019
by
domingue
rna_seq
2
updated
Jun 28, 2019
dge _workflow: analyze duplicates has a broken link to the plot of the model (dupRadar)
#81
· created
Feb 10, 2020
by
domingue
rna_seq
CLOSED
1
updated
Feb 10, 2020
dge_workflow: collect_kallisto_data.R fails for paired-end data
#84
· created
Mar 12, 2020
by
herseman
rna_seq
CLOSED
2
updated
Mar 12, 2020
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