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  • bioinfo
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  • Issues

  • Open 15
  • Closed 88
  • All 103
New issue
  • Priority Created date Last updated Milestone due date Due date Popularity Label priority Manual Title
  • add frip statistic to cs-workflow
    #5 · created Mar 18, 2016 by brandl
    • CLOSED
    • 1
    updated Mar 07, 2019
  • Add groupGo to cp_enrichment
    #4 · created Mar 16, 2016 by brandl
    • CLOSED
    • 1
    updated Nov 09, 2017
  • Add option to perform diffex-test in mf_feat_counts.R using fc-cutoff > 0.
    #12 · created Apr 10, 2017 by brandl   rna_seq
    • CLOSED
    • 2
    updated Jun 19, 2017
  • Add pcr duplication analysis for rna-seq workflow
    #6 · created Apr 22, 2016 by brandl   rna_seq
    • CLOSED
    • 0
    updated Nov 09, 2017
  • argparser error when --bam_files is the last optional argument
    #90 · created Jul 01, 2020 by domingue   rna_seq
    • CLOSED
    • 4
    updated Jul 01, 2020
  • auto-detect strandedness when extracting count matrix
    #16 · created May 29, 2017 by brandl
    • CLOSED
    • 2
    updated Mar 27, 2020
  • better handling of outliers
    #17 · created May 30, 2017 by brandl
    • CLOSED
    • 0
    updated Mar 07, 2019
  • Change bam_qc to report multi/single mapper proportions relative to number of aligned reads.
    #13 · created May 18, 2017 by brandl
    • CLOSED
    • 0
    updated Mar 07, 2019
  • Changes in ggplot break boxplot in fastqc_summary.R
    #72 · created Sep 09, 2019 by domingue   rna_seq
    • CLOSED
    • 1
    updated Sep 09, 2019
  • conda and bioconductor version
    #77 · created Jan 14, 2020 by domingue
    • CLOSED
    • 9
    updated Jan 21, 2020
  • consider to use alpha for more correct p_adjustment
    #23 · created Nov 14, 2017 by brandl
    • CLOSED
    • 5
    updated May 14, 2020
  • couldn't export the bitr function in clusterprofiler
    #3 · created Mar 08, 2016 by lakshman
    • CLOSED
    • 6
    updated Jul 08, 2017
  • Create stable conda enviroment for Single cell analysis conda on falcon
    #78 · created Jan 16, 2020 by domingue
    • CLOSED
    • 11
    updated Jul 08, 2020
  • create tool to create igv session file list of bam files
    #8 · created May 14, 2016 by brandl   rna_seq
    • CLOSED
    • 1
    updated Jul 08, 2017
  • cut delimeter breaks fastqc_summary.R
    #70 · created Sep 09, 2019 by domingue   rna_seq
    • CLOSED
    • 0
    updated Sep 09, 2019
  • DEP installation on falcon - nc-config missing
    #65 · created Aug 14, 2019 by domingue   mass_spec
    • CLOSED
    • 1
    updated Sep 17, 2019
  • DESeq2 check current clustering method
    #24 · created Nov 15, 2017 by herseman
    • 0
    updated Nov 29, 2018
  • dge workflow: add GTF an argument for differential gene expression
    #57 · created Jun 20, 2019 by domingue   rna_seq
    • 2
    updated Jun 28, 2019
  • dge _workflow: analyze duplicates has a broken link to the plot of the model (dupRadar)
    #81 · created Feb 10, 2020 by domingue   rna_seq
    • CLOSED
    • 1
    updated Feb 10, 2020
  • dge_workflow: collect_kallisto_data.R fails for paired-end data
    #84 · created Mar 12, 2020 by herseman   rna_seq
    • CLOSED
    • 2
    updated Mar 12, 2020
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