Issues · bioinfo / ngs_tools · GitLab

DESeq2 check current clustering method

#24 · created Nov 15, 2017 by herseman
- 0
updated Nov 29, 2018
dge workflow: add GTF an argument for differential gene expression

#57 · created Jun 20, 2019 by domingue rna_seq
- 2
updated Jun 28, 2019
dge_workflow: report number of reads per gene

#51 · created May 31, 2019 by herseman
- 14
updated Jun 30, 2020
general: create customized docker files for individual analyses done with our ngs_tools scripts

#39 · created Feb 11, 2019 by herseman
- 3
updated Mar 14, 2019
general: create templates for R scripts and shinyApps and revise the dge_star_template

#50 · created May 10, 2019 by herseman
- 1
updated May 14, 2019
gsea: improvments 2 of 4 tasks completed

#97 · created Sep 24, 2020 by domingue rna_seq
- 0
updated Oct 13, 2020
ms_workflow: aggregate protein isoforms data on gene level

#32 · created Jan 15, 2019 by herseman mass_spec
- 0
updated Feb 08, 2019
ms_workflow: handling of technical replicates

#40 · created Feb 13, 2019 by herseman mass_spec
- 2
updated Dec 09, 2019
ms_workflow: improve the results heatmap 2 of 3 tasks completed

#66 · created Aug 15, 2019 by domingue mass_spec
- 1
updated Aug 23, 2019
ms_workflow: move to peptide level

#45 · created Mar 07, 2019 by herseman
- 0
updated Dec 10, 2019
ms_workflow: report number of peptides (unique and razor peptides) for each protein group

#31 · created Jan 15, 2019 by herseman mass_spec
- 2
updated Feb 08, 2019
report proportion of multi-mappers in STAR report

#20 · created Nov 09, 2017 by herseman
- 0
updated Nov 16, 2017
run kallisto parallel to STAR

#21 · created Nov 09, 2017 by herseman
- 0
updated Nov 09, 2017
sc_workflow: write single script for Seurat workflow with tested and approved settings

#35 · created Jan 16, 2019 by herseman
- 3
updated Mar 22, 2019
Stranded counts

#88 · created Mar 27, 2020 by domingue rna_seq
- 5
updated Jul 13, 2020