Issues · bioinfo / ngs_tools · GitLab

write shiny app (results relative local app) for dge data

#22 · created Nov 09, 2017 by herseman
- CLOSED
- 0
updated Jan 19, 2018
use http://multiqc.info/ for qc reporting

#10 · created Jul 29, 2016 by brandl rna_seq
- CLOSED
- 1
updated Nov 18, 2019
use common q-score color scale for enrichment plots in cp_enrichment.R

#19 · created Jul 19, 2017 by brandl
- CLOSED
- 0
updated Nov 09, 2017
updating ms_workflow

#79 · created Jan 23, 2020 by herseman mass_spec
- CLOSED
- 14
updated Jul 13, 2020
update to more recent https://github.com/deeptools/deepTools/releases

#26 · created Aug 16, 2018 by brandl 2h
- CLOSED
- 3
updated Feb 20, 2020
try RNA-SeQC to get qc for bam files

#15 · created May 19, 2017 by brandl
- CLOSED
- 1
updated Dec 09, 2019
sc_workflow: write ShinyApp to explore metrics from the initial quality control

#44 · created Mar 04, 2019 by herseman
- CLOSED
- 3
updated Mar 20, 2019
sc_workflow: update sc_quality_check.R

#42 · created Feb 28, 2019 by herseman
- CLOSED
- 4
updated Mar 20, 2019
sc_workflow: add shinyApp to explore Seurat clusterings

#47 · created Mar 20, 2019 by herseman
- CLOSED
- 5
updated Mar 22, 2019
sc_workflow: add script for the calculation of diffusion map and pseudo time using the `destiny` package

#43 · created Mar 01, 2019 by herseman
- CLOSED
- 2
updated Mar 05, 2019
sc_workflow: add additional gene information for the top50 most highly abundant features in `sc_quality_check.R`

#46 · created Mar 13, 2019 by herseman
- CLOSED
- 1
updated Mar 13, 2019
revise limma workflow for mass spec data

#29 · created Jan 10, 2019 by herseman
- CLOSED
- 1
updated Jan 11, 2019
report improvements

#25 · created Nov 16, 2017 by brandl
- CLOSED
- 1
updated Feb 20, 2020
new ticket

#27 · created Nov 15, 2018 by brandl 3h
- CLOSED
- 3
updated Dec 07, 2018
ms_workflow: report settings from MaxQuant log file

#33 · created Jan 15, 2019 by herseman mass_spec
- CLOSED
- 2
updated Feb 12, 2019
ms_workflow: report differential abundance proteins along with the identification type information as well as additional protein information

#34 · created Jan 15, 2019 by herseman
- CLOSED
- 1
updated Feb 01, 2019
ms_workflow: replace PCA with plotly

#62 · created Aug 09, 2019 by domingue mass_spec
- CLOSED
- 2
updated Aug 09, 2019
ms_workflow: refine reorder information of protein groups

#83 · created Feb 18, 2020 by herseman mass_spec
- CLOSED
- 1
updated Feb 18, 2020
ms_workflow: QC improvments

#64 · created Aug 09, 2019 by domingue mass_spec
- CLOSED
- 1
updated Aug 13, 2019
ms_workflow: ms_ms_prop and reorder information are missing for protein IDs without fasta_header information

#86 · created Mar 17, 2020 by herseman mass_spec
- CLOSED
- 1
updated Mar 17, 2020

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