Skip to content

GitLab

  • Menu
Projects Groups Snippets
    • Loading...
  • Help
    • Help
    • Support
    • Community forum
    • Submit feedback
    • Contribute to GitLab
  • Sign in
  • N ngs_tools
  • Project information
    • Project information
    • Activity
    • Labels
    • Members
  • Repository
    • Repository
    • Files
    • Commits
    • Branches
    • Tags
    • Contributors
    • Graph
    • Compare
  • Issues 15
    • Issues 15
    • List
    • Boards
    • Service Desk
    • Milestones
  • Deployments
    • Deployments
    • Releases
  • Monitor
    • Monitor
    • Incidents
  • Analytics
    • Analytics
    • Repository
    • Value stream
  • Activity
  • Graph
  • Create a new issue
  • Commits
  • Issue Boards
Collapse sidebar
  • bioinfo
  • ngs_tools
  • Issues

  • Open 15
  • Closed 88
  • All 103
New issue
  • Priority Created date Last updated Milestone due date Due date Popularity Label priority Manual Title
  • Add option to perform diffex-test in mf_feat_counts.R using fc-cutoff > 0.
    #12 · created Apr 10, 2017 by brandl   rna_seq
    • CLOSED
    • 2
    updated Jun 19, 2017
  • export TPM instead of FPKM tables
    #14 · created May 19, 2017 by brandl   rna_seq
    • CLOSED
    • 1
    updated Jun 19, 2017
  • Export counts as TPM in featcounts_deseq_mf.R
    #9 · created May 18, 2016 by brandl   rna_seq
    • CLOSED
    • 0
    updated Jul 08, 2017
  • create tool to create igv session file list of bam files
    #8 · created May 14, 2016 by brandl   rna_seq
    • CLOSED
    • 1
    updated Jul 08, 2017
  • couldn't export the bitr function in clusterprofiler
    #3 · created Mar 08, 2016 by lakshman
    • CLOSED
    • 6
    updated Jul 08, 2017
  • error in the plotDispEsts()
    #2 · created Mar 07, 2016 by lakshman
    • CLOSED
    • 7
    updated Jul 08, 2017
  • impl better means to access summary and quality statististcs
    #18 · created May 30, 2017 by brandl
    • CLOSED
    • 0
    updated Nov 09, 2017
  • Add pcr duplication analysis for rna-seq workflow
    #6 · created Apr 22, 2016 by brandl   rna_seq
    • CLOSED
    • 0
    updated Nov 09, 2017
  • Add groupGo to cp_enrichment
    #4 · created Mar 16, 2016 by brandl
    • CLOSED
    • 1
    updated Nov 09, 2017
  • use common q-score color scale for enrichment plots in cp_enrichment.R
    #19 · created Jul 19, 2017 by brandl
    • CLOSED
    • 0
    updated Nov 09, 2017
  • write shiny app (results relative local app) for dge data
    #22 · created Nov 09, 2017 by herseman
    • CLOSED
    • 0
    updated Jan 19, 2018
  • new ticket
    #27 · created Nov 15, 2018 by brandl   3h
    • CLOSED
    • 3
    updated Dec 07, 2018
  • revise limma workflow for mass spec data
    #29 · created Jan 10, 2019 by herseman
    • CLOSED
    • 1
    updated Jan 11, 2019
  • ms_workflow: add option to run analysis on raw intensities instead of LFQs
    #30 · created Jan 15, 2019 by herseman
    • CLOSED
    • 0
    updated Jan 15, 2019
  • ms_workflow: report differential abundance proteins along with the identification type information as well as additional protein information
    #34 · created Jan 15, 2019 by herseman
    • CLOSED
    • 1
    updated Feb 01, 2019
  • make sure that exported tables contain double-normalized counts and not just size-normalized ones
    #1 · created Feb 05, 2016 by brandl   rna_seq
    • CLOSED
    • 2
    updated Feb 12, 2019
  • ms_workflow: report settings from MaxQuant log file
    #33 · created Jan 15, 2019 by herseman   mass_spec
    • CLOSED
    • 2
    updated Feb 12, 2019
  • ms_workflow: ms_limma.R returns error when no differentially abundant proteins were found
    #41 · created Feb 14, 2019 by herseman   mass_spec
    • CLOSED
    • 1
    updated Feb 14, 2019
  • sc_workflow: add script for the calculation of diffusion map and pseudo time using the `destiny` package
    #43 · created Mar 01, 2019 by herseman
    • CLOSED
    • 2
    updated Mar 05, 2019
  • add frip statistic to cs-workflow
    #5 · created Mar 18, 2016 by brandl
    • CLOSED
    • 1
    updated Mar 07, 2019
  • Prev
  • 1
  • 2
  • 3
  • 4
  • 5
  • Next