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bioinfo
ngs_tools
Issues
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15
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88
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103
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Title
Add option to perform diffex-test in mf_feat_counts.R using fc-cutoff > 0.
#12
· created
Apr 10, 2017
by
brandl
rna_seq
CLOSED
2
updated
Jun 19, 2017
export TPM instead of FPKM tables
#14
· created
May 19, 2017
by
brandl
rna_seq
CLOSED
1
updated
Jun 19, 2017
Export counts as TPM in featcounts_deseq_mf.R
#9
· created
May 18, 2016
by
brandl
rna_seq
CLOSED
0
updated
Jul 08, 2017
create tool to create igv session file list of bam files
#8
· created
May 14, 2016
by
brandl
rna_seq
CLOSED
1
updated
Jul 08, 2017
couldn't export the bitr function in clusterprofiler
#3
· created
Mar 08, 2016
by
lakshman
CLOSED
6
updated
Jul 08, 2017
error in the plotDispEsts()
#2
· created
Mar 07, 2016
by
lakshman
CLOSED
7
updated
Jul 08, 2017
impl better means to access summary and quality statististcs
#18
· created
May 30, 2017
by
brandl
CLOSED
0
updated
Nov 09, 2017
Add pcr duplication analysis for rna-seq workflow
#6
· created
Apr 22, 2016
by
brandl
rna_seq
CLOSED
0
updated
Nov 09, 2017
Add groupGo to cp_enrichment
#4
· created
Mar 16, 2016
by
brandl
CLOSED
1
updated
Nov 09, 2017
use common q-score color scale for enrichment plots in cp_enrichment.R
#19
· created
Jul 19, 2017
by
brandl
CLOSED
0
updated
Nov 09, 2017
write shiny app (results relative local app) for dge data
#22
· created
Nov 09, 2017
by
herseman
CLOSED
0
updated
Jan 19, 2018
new ticket
#27
· created
Nov 15, 2018
by
brandl
3h
CLOSED
3
updated
Dec 07, 2018
revise limma workflow for mass spec data
#29
· created
Jan 10, 2019
by
herseman
CLOSED
1
updated
Jan 11, 2019
ms_workflow: add option to run analysis on raw intensities instead of LFQs
#30
· created
Jan 15, 2019
by
herseman
CLOSED
0
updated
Jan 15, 2019
ms_workflow: report differential abundance proteins along with the identification type information as well as additional protein information
#34
· created
Jan 15, 2019
by
herseman
CLOSED
1
updated
Feb 01, 2019
make sure that exported tables contain double-normalized counts and not just size-normalized ones
#1
· created
Feb 05, 2016
by
brandl
rna_seq
CLOSED
2
updated
Feb 12, 2019
ms_workflow: report settings from MaxQuant log file
#33
· created
Jan 15, 2019
by
herseman
mass_spec
CLOSED
2
updated
Feb 12, 2019
ms_workflow: ms_limma.R returns error when no differentially abundant proteins were found
#41
· created
Feb 14, 2019
by
herseman
mass_spec
CLOSED
1
updated
Feb 14, 2019
sc_workflow: add script for the calculation of diffusion map and pseudo time using the `destiny` package
#43
· created
Mar 01, 2019
by
herseman
CLOSED
2
updated
Mar 05, 2019
add frip statistic to cs-workflow
#5
· created
Mar 18, 2016
by
brandl
CLOSED
1
updated
Mar 07, 2019
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