Commit 06edce38 authored by Holger Brandl's avatar Holger Brandl

added readme

parent 645cf947
Use
/projects/bioinfo/scripts/ngs_tools/v1.0
for stable branch, or
/projects/bioinfo/scripts/ngs_tools/dev
for current master where changes can be added and are pushed occassionally to the origin on git-srv1
Possible extension:
* better peak report bioinfo_templates/chipseq_workflow/peak_report.R
* write igv session xml programmatically including adjusted track
\ No newline at end of file
#!/usr/bin/env Rscript
#+ echo=FALSE
devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.4/R/core_commons.R")
......@@ -152,6 +153,9 @@ annoPeaks <- peaks %>% group_by(sample, peak_type) %>% do(annotatePeaks(.))
save(annoPeaks, file="annoPeaks.RData")
# annoPeaks <- local(get(load("annoPeaks.RData")))
## todo merge
#peaks, annoPeaks
#' CSA adds ovelap category, nearest gene id and distance to TSS
#+ results='asis'
......
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