Commit 28652a49 authored by Holger Brandl's avatar Holger Brandl

use 1 as status code on fail

parent ccd20785
......@@ -14,6 +14,7 @@ import joblist.JobList
import org.docopt.Docopt
import java.io.File
import java.nio.file.Files
import kotlin.system.exitProcess
//val args = listOf("/projects/bioinfo/igenomes/Drosophila_melanogaster/Ensembl/BDGP6", "test.fastq.gz")
//val args = listOf("--disable-pe-pairing", "/projects/bioinfo/igenomes/Drosophila_melanogaster/Ensembl/BDGP6", "test.fastq.gz")
......@@ -152,6 +153,7 @@ jl.createHtmlReport()
if(!jl.isComplete){
mailme("star_align.kts failed in ${File(".").absolutePath}", jl.status().toString())
exitProcess(1)
}
//// estimate expresssion with http://bioinf.wehi.edu.au/featureCounts/
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment