Commit 2fa83cdf authored by Holger Brandl's avatar Holger Brandl

added icon to expression explorer

parent 31c03c20
......@@ -29,7 +29,8 @@ append2path ${BIO_BIN_BASE}/bedtools2-2.25.0/bin
append2path ${BIO_BIN_BASE}/samtools-1.5
append2path ${BIO_BIN_BASE}/STAR-2.5.2b/source
append2path ${BIO_BIN_BASE}/kallisto-v0.43.1
append2path ${BIO_BIN_BASE}/appify
#append2path ${BIO_BIN_BASE}/appify
append2path ${BIO_BIN_BASE}/appify2
# todo this is not an actual tagged release and should be appended differently (if at all)
......@@ -463,6 +464,10 @@ dge_create_explorer_app() {
files='tpms_by_replicate.txt fpkms_by_replicate.txt de_results.txt basic_design.txt'
ls $files 2>/dev/null || { echo "Can not create app, because not all required data files ($files) exist in the current directory" 1>&2; return; }
appify ${NGS_TOOLS}/dge_workflow/expression_explorer/expression_explorer.R "expression_explorer"
#appify ${NGS_TOOLS}/dge_workflow/expression_explorer/expression_explorer.R "expression_explorer"
## with icon using appify fork https://gist.github.com/oubiwann/453744744da1141ccc542ff75b47e0cf
appify2 -n "expression_explorer" -i ${NGS_TOOLS}/dge_workflow/expression_explorer/scf_logo_2018_clip_ee.png.icns -s ${NGS_TOOLS}/dge_workflow/expression_explorer/expression_explorer.R
}
export -f dge_create_explorer_app
\ No newline at end of file
......@@ -287,9 +287,16 @@ mv /projects/bioinfo/bowtie-1.2.1.1-linux-x86_64.zip ~/bin
unzip bowtie-1.2.1.1-linux-x86_64.zip
#########################################################################################################################
#### appify
#
#cd /bin/
#wget https://gist.githubusercontent.com/mathiasbynens/674099/raw/9e64331e348b20049975519b866148050db06da5/appify -O appify
#chmod r+x appify
########################################################################################################################
### appify
### appify fork with image icon support https://gist.github.com/oubiwann/453744744da1141ccc542ff75b47e0cf
cd /bin/
wget https://gist.githubusercontent.com/mathiasbynens/674099/raw/9e64331e348b20049975519b866148050db06da5/appify -O appify
chmod r+x appify
\ No newline at end of file
mkdir ~/bin/appify2
wget https://gist.githubusercontent.com/oubiwann/453744744da1141ccc542ff75b47e0cf/raw/a28ece126d1ff7ec0bf851acce15175e4deceb7d/appify.sh -O ~/bin/appify2/appify
chmod ug+x ~/bin/appify2/appify
\ No newline at end of file
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