Commit 4872e96f authored by Holger Brandl's avatar Holger Brandl

updated tag instructions

parent 75f91b8a
...@@ -26,6 +26,22 @@ To use the structure from above when working on bioinformatics-srv1 just use ...@@ -26,6 +26,22 @@ To use the structure from above when working on bioinformatics-srv1 just use
``` ```
   
How to tag it for a project
---------------------------
```bash
# ensure there are no pending changes
# http://stackoverflow.com/questions/5139290/how-to-check-if-theres-nothing-to-be-committed-in-the-current-branch
git diff --exit-code
# create the tag for current branch
(cd ${NGS_TOOLS} && test -n "$project" && git diff --exit-code && git tag "${project}__$(date +'%Y%m%d')") || echo "could not tag current branch"
# and log it
git describe --tags >> ${baseDir}/.used_ngs_tools
```
How to create a new version tag How to create a new version tag
------------------------------- -------------------------------
...@@ -33,7 +49,6 @@ How to create a new version tag ...@@ -33,7 +49,6 @@ How to create a new version tag
1. Create branch: 1. Create branch:
``` ```
cd /Volumes/projects/bioinfo/scripts/ngs_tools/dev cd /Volumes/projects/bioinfo/scripts/ngs_tools/dev
git checkout -b v3.23 git checkout -b v3.23
git push git push
...@@ -54,16 +69,9 @@ chmod -R -w ../$newVersion ...@@ -54,16 +69,9 @@ chmod -R -w ../$newVersion
``` ```
   
ToDo
ToDos
==== ====
- Finish igv_track_range.sh
- Write igv session xml programatically including adjusted track; render open
session link ( like
http://localhost:60151/load?file=/Users/brandl/Desktop/my_session.xml) to
reports above igv-link tables
- Learn from http://www.bioconductor.org/help/workflows/rnaseqGene/ - Learn from http://www.bioconductor.org/help/workflows/rnaseqGene/
* distance matrix using Poisson Distance * distance matrix using Poisson Distance
* pca variance proportions on axis
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