Commit 4ee94457 authored by Holger Brandl's avatar Holger Brandl

updated igv and added helper

parent 5d698d72
......@@ -470,4 +470,9 @@ ls $files 2>/dev/null || { echo "Can not create app, because not all required da
appify2 -n "expression_explorer" -i ${NGS_TOOLS}/dge_workflow/expression_explorer/scf_logo_2018_clip_ee.png.icns -s ${NGS_TOOLS}/dge_workflow/expression_explorer/expression_explorer.R
}
export -f dge_create_explorer_app
\ No newline at end of file
export -f dge_create_explorer_app
## add support for igv session generator and simpify launcher
alias make_igv_session="kscript https://git.io/vyLlj"
igv(){ ${BIO_BIN_BASE}/IGV_2.4.7/igv.sh "$@"; }
......@@ -217,8 +217,9 @@ mv IGVTools igvtools_2.3.91
ll igvtools_2.3.91
cd ~/bin/
wget http://data.broadinstitute.org/igv/projects/downloads/IGV_2.3.97.zip
unzip IGV_2.3.97.zip
## link from http://software.broadinstitute.org/software/igv/download
wget http://data.broadinstitute.org/igv/projects/downloads/2.4/IGV_2.4.7.zip
unzip IGV_2.4.7.zip
## kallisto see https://github.com/pachterlab/kallisto/blob/master/INSTALL.md
......
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