Commit 657cb4bc authored by domingue's avatar domingue

Added gffread, a tool useful to convert gff to gtf to extract transcript sequences from a gtf.

parent bf90bebb
......@@ -188,7 +188,7 @@ tar -xvzf 2.7.0f.tar.gz
cd STAR-2.7.0f/source
make STAR
append2path ${BIO_BIN_BASE}/STAR-2.7.0f/source
STAR --version
STAR --version ## To check if it's in path
## macos
cd ~/bin/
......@@ -355,6 +355,14 @@ tar -xvzf gffcompare-0.10.4.tar.gz
cd gffcompare-0.10.4
make
### gffread
cd ~/bin/
wget http://ccb.jhu.edu/software/stringtie/dl/gffread-0.11.4.tar.gz
tar -xvzf gffread-0.11.4.tar.gz
cd gffread-0.11.4
make
########################################################################################################################
### RNAfold
......
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