Commit 788904dd authored by Holger Brandl's avatar Holger Brandl

added support for reportName inheritance

parent d17cae39
......@@ -23,6 +23,7 @@ load_pack(knitr)
load_pack(DT)
results_prefix = if_else(exists("reportName"), reportName, "")
## todo why is tidyr not processing an empty dataframe
keggPathways <- opts$pathways %>% str_split(",") %>% unlist()
......@@ -59,7 +60,7 @@ sliceData <- overlayData %>% as_df %>%
data.frame(set=names(sliceData)) %>% mutate(slice_index=row_number()) %>% kable()
pwPlotDir <-".pathways"
pwPlotDir = add_prefix("pathways_pngs")
dir.create(pwPlotDir)
......
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