Commit 9839905f authored by Holger Brandl's avatar Holger Brandl

added email on fail

parent 1a51ffa3
......@@ -6,6 +6,7 @@
// git clone https://github.com/docopt/docopt.java && cd docopt.java && mvn clean package install -Dmaven.test.skip=true
// kotlinc-jvm -classpath $(mvncp org.docopt:docopt:0.6.0-SNAPSHOT)
import de.mpicbg.scicomp.kutils.ShellUtils.mailme
import de.mpicbg.scicomp.kutils.evalBash
import de.mpicbg.scicomp.kutils.joblist.JobConfig
import de.mpicbg.scicomp.kutils.joblist.createHtmlReport
......@@ -149,6 +150,9 @@ jl.waitUntilDone(1000)
// http://lampwww.epfl.ch/~michelou/scala/using-scala-from-java.html
jl.createHtmlReport()
if(!jl.isComplete){
mailme("star_align.kts failed in ${File(".").absolutePath}", jl.status().toString())
}
//// estimate expresssion with http://bioinf.wehi.edu.au/featureCounts/
////Summarize multiple datasets at the same time:
......
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