Commit 9ee74d5b authored by Lena Hersemann's avatar Lena Hersemann

fixed bug concerning biomart database selection

parent f74a8f8c
......@@ -523,9 +523,9 @@ stopifnot(map_lgl(pathwayPlots, ~ file.exists(.$plotfile)) %>% all)
install_package("biomaRt")
library(rapportools)
## prepare tooltips with expression scores
biomart_db <- ifelse(!is.null(opts$biomart_database), opts$biomart_database, guess_mart(geneLists$ensembl_gene_id))
biomart_db <- ifelse(!is.empty(opts$biomart_database), opts$biomart_database, guess_mart(geneLists$ensembl_gene_id))
ens2entrez <- quote({
# mart <- biomaRt::useDataset(guess_mart(geneLists$ensembl_gene_id), mart = biomaRt::useMart("ensembl"))
## todo fix this https://support.bioconductor.org/p/74322/
......
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