Commit e797a356 authored by Holger Brandl's avatar Holger Brandl

separated star and b1 workflows

parent 01b4dab6
......@@ -24,7 +24,6 @@ export PATH=/projects/bioinfo/holger/bin/bedtools2-2.25.0/bin/:$PATH
export PATH=/projects/bioinfo/holger/bin/samtools-1.3:$PATH
export PATH=/home/brandl/bin/subread-1.4.6-p3-Linux-x86_64/bin:$PATH
#export PATH=/home/brandl/bin/STAR/STAR-STAR_2.4.1d/source:$PATH
export PATH=/home/brandl/bin/STAR-2.5.1b/source:$PATH
......
......@@ -20,7 +20,7 @@ import java.io.File
val usage = """
Use star to align fastq files against a genome
Usage: star_align.sh [options] <igenome> <fastq_files>...
Usage: star_align.kts [options] <igenome> <fastq_files>...
Options:
--gtf <gtfFile> Custom gtf file instead of igenome bundled copy
......
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