diff --git a/web/src/components/AboutPage.vue b/web/src/components/AboutPage.vue
index e366ffef2362e4b62ba8375f5a40b3b57a8739e7..0d885616f48f80895bbf5a7e30abd76d46856d58 100644
--- a/web/src/components/AboutPage.vue
+++ b/web/src/components/AboutPage.vue
@@ -262,7 +262,7 @@ export default {
computed: {},
methods: {
convertItalic(val) {
- console.log(val.italics());
+
return val.italics();
},
},
diff --git a/web/src/components/AddNovelCondensate.vue b/web/src/components/AddNovelCondensate.vue
index 2c1fc8bf89bee562ac127c51c65d1fc3ae4116ea..96fa2f272287805e4dc26f7873f3d0fa7269222f 100644
--- a/web/src/components/AddNovelCondensate.vue
+++ b/web/src/components/AddNovelCondensate.vue
@@ -739,7 +739,7 @@ export default {
},
getUserData() {
const userRole = this.$store.getters["User/userRole"];
- // console.log('role is', userRole);
+
return userRole;
},
proteinNameList: {
@@ -754,7 +754,7 @@ export default {
);
this.$store.dispatch("Param/removeProtein", idx);
obj.deleteTag();
- // console.log(this.$store.getters['Param/proteinList'])
+
},
},
},
@@ -810,11 +810,11 @@ export default {
},
async addUniprot() {
const vm = this;
- console.log("adding uniprot");
+
Object.keys(vm.newProtein.errors).forEach(
(v) => (vm.newProtein.errors[v] = false)
);
- console.log("uniprot is", this.newProtein.uniprot_id);
+
const validUniprot = await this.uniprotIdValidation(
this.newProtein.uniprot_id
);
@@ -877,7 +877,7 @@ export default {
vm.showAddNewProtein = false;
},
async uniprotIdValidation(id) {
- console.log("validation hitting");
+
try {
const res = await fetch(`https://rest.uniprot.org/uniprotkb/${id}`, {
method: "HEAD",
@@ -900,7 +900,7 @@ export default {
return { valid: true, msg: "Valid Uniprot ID." };
}
} catch (err) {
- console.log("error", err);
+
return {
valid: false,
msg:
@@ -1074,7 +1074,7 @@ export default {
vm.$emit("hideToaster");
}, 2000);
} catch (e) {
- console.error(e);
+
vm.isLoading = false;
vm.fetchError =
e.message || "Something went wrong, please try again later!";
diff --git a/web/src/components/BarcodePlot.vue b/web/src/components/BarcodePlot.vue
index 449a8485c732416f17b7350d23ebf7f5194a0fee..3c63b811d3bd4f844602c5c60bd7e1000c8d3f90 100644
--- a/web/src/components/BarcodePlot.vue
+++ b/web/src/components/BarcodePlot.vue
@@ -55,7 +55,7 @@ export default {
}
},
mounted() {
- // console.log(this.x.split(''))
+
}
}
</script>
diff --git a/web/src/components/CMS/DriverCriterion.vue b/web/src/components/CMS/DriverCriterion.vue
index 1e56012075cdd8b0820882ff8c4328294efe8f33..bccb779765303a46f9a1e539a02017bc410951d2 100644
--- a/web/src/components/CMS/DriverCriterion.vue
+++ b/web/src/components/CMS/DriverCriterion.vue
@@ -418,7 +418,7 @@ export default {
this.toasterIsOpen = false;
}, 2000);
} catch (e) {
- console.error(e);
+
this.isLoading = false;
this.serverError = true;
this.errMessage =
diff --git a/web/src/components/CMS/ExperimentalEvidence.vue b/web/src/components/CMS/ExperimentalEvidence.vue
index bfc7697543f8abd72f274920079df9bcd35da4a1..da0c17379dd7ae7032a3cb82aeced3a0fd297544 100644
--- a/web/src/components/CMS/ExperimentalEvidence.vue
+++ b/web/src/components/CMS/ExperimentalEvidence.vue
@@ -438,7 +438,7 @@ export default {
this.toasterIsOpen = false;
}, 2000);
} catch (e) {
- console.error(e);
+
this.isLoading = false;
this.serverError = true;
this.errMessage =
diff --git a/web/src/components/CMS/ProteinFunctionalType.vue b/web/src/components/CMS/ProteinFunctionalType.vue
index 994901bd296ec94d0806bc00fd4fd24d2e09aa06..0fc71553278c3d769d0d54692ed70c8f34d81aa8 100644
--- a/web/src/components/CMS/ProteinFunctionalType.vue
+++ b/web/src/components/CMS/ProteinFunctionalType.vue
@@ -319,7 +319,7 @@ export default {
this.toasterIsOpen = false;
}, 2000);
} catch (e) {
- console.error(e);
+
this.isLoading = false;
this.serverError = true;
this.errMessage =
diff --git a/web/src/components/CMS/addDeleteMarker.vue b/web/src/components/CMS/addDeleteMarker.vue
index 76910fcdcdaef60d6ef8a94e96f6371094335413..305719297a848a1d0e9256f8791bc59c6115ef69 100644
--- a/web/src/components/CMS/addDeleteMarker.vue
+++ b/web/src/components/CMS/addDeleteMarker.vue
@@ -567,7 +567,7 @@ export default {
this.toasterIsOpen = false;
}, 2000);
} catch (e) {
- console.error(e);
+
this.isLoading = false;
this.error = true;
this.message =
diff --git a/web/src/components/CMS/addDeletePubmed.vue b/web/src/components/CMS/addDeletePubmed.vue
index ad48135db730c8d59b6078154a16b33aae12db98..325f024f1bfc630bd9c11a6f6004ce328d9ea14f 100644
--- a/web/src/components/CMS/addDeletePubmed.vue
+++ b/web/src/components/CMS/addDeletePubmed.vue
@@ -637,7 +637,7 @@ export default {
let pubmedData;
for (let key in data) {
if (key === this.uniprot) {
- console.log('working in add', data[key]);
+
pubmedData = data[key];
}
}
@@ -693,7 +693,7 @@ export default {
if (this.mode === 'condensate' && this.type === 'Add') {
//const foundPubId = this.pubmed.find((p) => p === this.pubmedId);
- console.log('return val', this.inputValidation(this.pubmed));
+
let valid = this.inputValidation(this.pubmed);
@@ -882,7 +882,7 @@ export default {
this.toasterIsOpen = false;
}, 2000);
} catch (e) {
- console.error(e);
+
this.isLoading = false;
this.serverError = true;
this.message =
diff --git a/web/src/components/CMS/evidenceStarRating.vue b/web/src/components/CMS/evidenceStarRating.vue
index 177598c2f7918a753807d4f48ced33d5f86d3a71..4818ddb65f373778779056c4b903e566fda02acc 100644
--- a/web/src/components/CMS/evidenceStarRating.vue
+++ b/web/src/components/CMS/evidenceStarRating.vue
@@ -237,7 +237,7 @@ export default {
this.toasterIsOpen = false;
}, 2000);
} catch (e) {
- console.error(e);
+
this.isLoading = false;
this.error = true;
this.message =
diff --git a/web/src/components/CMS/fetchProfile.vue b/web/src/components/CMS/fetchProfile.vue
index cbdae9cc19e2b115a9a3ec9da53ea180e4eed58b..df97932fd4e7c8ae4bcc539e2d58f2ccbd692578 100644
--- a/web/src/components/CMS/fetchProfile.vue
+++ b/web/src/components/CMS/fetchProfile.vue
@@ -31,22 +31,21 @@ export default {
mounted() {
const vm = this;
// /* eslint-disable no-console */
- // console.log(vm.locus);
+
vm.getItems();
},
methods: {
async getItems() {
const vm = this;
- // console.log(host)
- // console.log('is dev?',vm.isDev);
+
if (vm.isDev) {
host = require('../js/const').devApiHost;
}
- // console.log(vm.isExperimental)
+
let url = `${host}/api/users/me`;
- // console.log('url is',url);
+
const jwt = vm.jwt;
if (jwt === null) {
@@ -82,23 +81,14 @@ export default {
vm.error = false;
const responseData = await res.json();
- // console.log('user data', responseData);
+
setTimeout(() => {
vm.loading = false;
vm.response = responseData;
}, 10);
- // .then(response => response.json())
- // .then((response) => {
- // // /* eslint-disable no-console */
- // console.log(response);
-
- // setTimeout(() => {
- // vm.loading = false;
- // vm.response = response
- // }, 10);
- // })
+
},
},
};
diff --git a/web/src/components/CMS/fetchUpdateItems.vue b/web/src/components/CMS/fetchUpdateItems.vue
index 6daef83e5e4e7cd8b05364e5d7506aa8f6f64958..aa27798c74e25792eb0dc99d4f8e962a65558398 100644
--- a/web/src/components/CMS/fetchUpdateItems.vue
+++ b/web/src/components/CMS/fetchUpdateItems.vue
@@ -29,20 +29,20 @@ export default {
mounted() {
const vm = this
// /* eslint-disable no-console */
- // console.log(vm.locus);
+
vm.getItems();
},
methods: {
getItems() {
const vm = this;
- // console.log(host)
+
if(vm.isDev) {
host = require('../js/const').devApiHost;
}
- // console.log(vm.isExperimental)
+
const qs = require('qs');
const query = qs.stringify({
sort: ['id:asc'],
@@ -74,7 +74,7 @@ export default {
.then(response => response.json())
.then((response) => {
// /* eslint-disable no-console */
- // console.log(response);
+
setTimeout(() => {
vm.loading = false;
diff --git a/web/src/components/CMS/fetchUserSpecificUpdateItems.vue b/web/src/components/CMS/fetchUserSpecificUpdateItems.vue
index 78092e6d7135abb3ed186a378942e23f972cc697..a31e09ad1c2ed9d68fb7c3a902936165d51bab2f 100644
--- a/web/src/components/CMS/fetchUserSpecificUpdateItems.vue
+++ b/web/src/components/CMS/fetchUserSpecificUpdateItems.vue
@@ -29,21 +29,21 @@ props:['id'],
mounted() {
const vm = this
// /* eslint-disable no-console */
- // console.log(vm.locus);
+
vm.getItems();
- console.log(vm.canonicalId);
+
},
methods: {
getItems() {
const vm = this;
- // console.log(host)
+
if(vm.isDev) {
host = require('../js/const').devApiHost;
}
- // console.log(vm.isExperimental)
+
const qs = require('qs');
const query = qs.stringify({
sort: ['id:asc'],
@@ -56,7 +56,7 @@ props:['id'],
});
let url = `${host}/api/update-item/filterProteinOrCondensateRequest/${vm.id}`;
- console.log('url is', url);
+
const jwt = vm.jwt;
if(jwt === null) {
@@ -76,7 +76,7 @@ props:['id'],
.then(response => response.json())
.then((response) => {
// /* eslint-disable no-console */
- console.log('data is', response.data)
+
setTimeout(() => {
vm.loading = false;
diff --git a/web/src/components/CMS/fetchUsers.vue b/web/src/components/CMS/fetchUsers.vue
index fda867c9c35a04de0b00f211e456a1422858dc43..c3e24dc027d415ed7d2a1d84daa785d748b37a77 100644
--- a/web/src/components/CMS/fetchUsers.vue
+++ b/web/src/components/CMS/fetchUsers.vue
@@ -30,20 +30,20 @@ export default {
mounted() {
const vm = this
// /* eslint-disable no-console */
- // console.log(vm.locus);
+
vm.getItems();
},
methods: {
async getItems() {
const vm = this;
- // console.log(host)
+
if(vm.isDev) {
host = require('../js/const').devApiHost;
}
- // console.log(vm.isExperimental)
+
let url = `${host}/api/users`;
diff --git a/web/src/components/CMS/updateFunctionalType.vue b/web/src/components/CMS/updateFunctionalType.vue
index f4a178fd7701dee1085d96a9d408129abfdb0733..d22d09db684a8e47b64950f63343c3c8bc4b975d 100644
--- a/web/src/components/CMS/updateFunctionalType.vue
+++ b/web/src/components/CMS/updateFunctionalType.vue
@@ -213,7 +213,7 @@ export default {
async updateFuctionalType() {
const vm = this;
- // console.log(host)
+
if (vm.isDev) {
host = require('../js/const').devApiHost;
@@ -289,7 +289,7 @@ export default {
this.toasterIsOpen = false;
}, 2000);
} catch (e) {
- console.error(e);
+
this.isLoading = false;
this.serverError = true;
this.message =
diff --git a/web/src/components/CondensateDetailPage.vue b/web/src/components/CondensateDetailPage.vue
index dc63ec6da8f7934dcbd915a3dab9c59e58bb14bf..d532c8a89b3024d0b0a4d9963a7f434d7393015c 100644
--- a/web/src/components/CondensateDetailPage.vue
+++ b/web/src/components/CondensateDetailPage.vue
@@ -1064,7 +1064,7 @@ export default {
this.toasterIsOpen = false;
}, 2000);
} catch (e) {
- console.error(e);
+
this.isLoading = false;
this.nameCommentErr = true;
this.condensateNameCommentErrMsg =
@@ -1145,7 +1145,7 @@ export default {
this.toasterIsOpen = false;
}, 2000);
} catch (e) {
- console.error(e);
+
this.descriptionMsg = "";
this.descriptionErrorMsg =
e.message || "Something went wrong, please try again later!";
@@ -1175,7 +1175,7 @@ export default {
return { valid: true, msg: "Valid Uniprot ID." };
}
} catch (err) {
- console.log("error", err);
+
return {
valid: false,
msg:
@@ -1289,62 +1289,17 @@ export default {
this.toasterIsOpen = false;
}, 2000);
} catch (e) {
- console.error(e);
+
this.message =
e.message || "Something went wrong, please try again later!";
this.isSubmitted = true;
this.error = true;
}
- // try {
- // const res=await this.axios.get(
- // `${host}
- // /api/update-item/findCondensate/${response.data.canonical_id}`,
-
- // {
- // headers: {
- // Authorization: `Bearer ${this.jwt}`,
- // },
- // }
- // );
-
- // console.log(await res)
-
- // } catch (e) {
- // console.error(e);
-
- // }
+
},
- // async getRequest() {
- // if (this.isDev) {
- // host = require("./js/const").devApiHost;
- // }
- // let url = `${host}/api/update-items`;
- // try {
- // const response = await this.axios.get(
- // url,
-
- // {
- // headers: {
- // Authorization: `Bearer ${this.jwt}`,
- // },
- // }
- // );
- // return response.data.data;
- // } catch (e) {
- // console.error(e);
- // this.message =
- // e.message || "Something went wrong, please try again later!";
- // this.isSubmitted = true;
- // this.error = true;
- // }
- // },
-
- // async getSumittedRequest() {
- // const requestData = await this.getRequest();
- // console.log("get req", requestData);
- // },
+
getProteinLinks(uniprots) {
if (uniprots)
diff --git a/web/src/components/CondensateExample.vue b/web/src/components/CondensateExample.vue
index 630e6a1645689ca269e8f26d100636f6534549e0..2a6312e64bf2f0d08b56b0c4b8bfaf778bc73b3d 100644
--- a/web/src/components/CondensateExample.vue
+++ b/web/src/components/CondensateExample.vue
@@ -11,7 +11,7 @@ export default {
CondensateDetailPage
},
mounted: function () {
- // console.log(this.$route.name)
+
}
}
</script>
\ No newline at end of file
diff --git a/web/src/components/CondensateUpdateItemsTable.vue b/web/src/components/CondensateUpdateItemsTable.vue
index dcff327b35f035be9f587e1489aaae74e1cc8871..81761df4358a4e5533922177de632b9eeddb050f 100644
--- a/web/src/components/CondensateUpdateItemsTable.vue
+++ b/web/src/components/CondensateUpdateItemsTable.vue
@@ -120,18 +120,7 @@ export default {
} else {
return data;
}
- // console.log(_.flatMap(row.condensates, c => c.data_sources))
- // if (!vm.proteinDriverCriterion) {
- // return;
- // }
- // let dat = vm.proteinDriverCriterion[row.uniprot_id];
- // if (dat) {
-
- // const val= dat.map(i=> i==='self_ps'? dat[i]='Self-PS': _.startCase(i))
-
- // return val.join(', ');
- // }
- // return '';
+
},
},
{
@@ -141,14 +130,7 @@ export default {
{
title: 'Status',
data: 'attributes.Status',
- // render: function(row, data, index){
- // console.log("in color new", data);
- // if(data.attributes.Status === 'rejected'){
- // console.log("working in rejected");
- // $(row).find('td:eq(3)').css('color', 'red');
- // }
-
- // }
+
fnCreatedCell: (nTd, sData, oData) => {
if (sData === 'synced') {
$(nTd).html(
@@ -199,48 +181,9 @@ export default {
text-center view-link">
View
</button>`,
- // render: function (data, type, row, meta) {
-
- // if(vm.getRole === "Maintainer"){
- // console.log(" yea true", data.data.attributes);
- // console.log(data.data.attributes);
- // if(data.data.attributes.Status==="requested"){
- // console.log(data.data.attributes.Status);
- // return `<button class="btn btn-primary edit-link btn-outline font-bold" style="font-weight:bold">
- // Accept<i class="fa fa-edit" style="font-weight:bold"></i>
- // </button>`
- // }
- // else{
- // return `<button class="btn btn-primary edit-link btn-outline font-bold" style="font-weight:bold">
- // Synced<i class="fa fa-edit" style="font-weight:bold"></i>
- // </button>`
- // }
- // }
-
- // },
- // fnCreatedCell: (nTd, sData, oData) => {
- // $(nTd).html(
- // `<button class="btn btn-primary edit-link btn-outline font-bold" style="font-weight:bold">
- // <i class="fa fa-edit" style="font-weight:bold"></i>
- // </button>
- // <button class="btn btn-danger delete-link btn-outline font-bold" style="font-weight:bold">
- // <i class="fa fa-trash" style="font-weight:bold"></i>
- // </button>
- // `
- // );
- // },
+
},
- // {
- // title: "Reviewer",
- // data: "attributes.reviewedBy",
- // render: function (data, type, row, meta) {
- // if (data.data) {
- // return data.data.attributes.username;
- // } else {
- // return "";
- // }
- // },
- // },
+
];
vm.headers = columns;
@@ -304,13 +247,12 @@ export default {
async fetchCallback(data, aoData, fnCallback) {
let vm = this;
- // console.log(aoData)
+
let orderItem = aoData.find((x) => x.name === 'order');
let startItem = aoData.find((x) => x.name === 'start');
let lengthItem = aoData.find((x) => x.name === 'length');
let searchItem = aoData.find((x) => x.name === 'search');
- // console.log(`length = ${lengthItem.value}, offset = ${startItem.value}`)
- // console.log(`orderItem = ${orderItem.value}, searchItem = ${searchItem.value.value}`)
+
const page = startItem.value / lengthItem.value + 1;
@@ -342,10 +284,10 @@ export default {
let order = ['SubmittedAt:desc'];
if (orderItem.value.length > 0) {
orderItem.value.forEach(function (data) {
- // console.log(data)
+
order = `${columns[data.column]}:${data.dir}`;
});
- // console.log(order)
+
}
query['sort'] = order;
diff --git a/web/src/components/ContributorListTable.vue b/web/src/components/ContributorListTable.vue
index b7497ec43da2d2cb30a5f24978112e40549617cd..73fdba0ec526c42225e932071e7d71f83b83b7b9 100644
--- a/web/src/components/ContributorListTable.vue
+++ b/web/src/components/ContributorListTable.vue
@@ -173,7 +173,7 @@ export default {
} catch (err) {
this.error = true;
this.errorMsg = `${err.message} Internal Error, please write a mail to DDCode Admin`;
- console.log(err);
+
}
},
},
diff --git a/web/src/components/DDCODE/fetchCondensate.vue b/web/src/components/DDCODE/fetchCondensate.vue
index c424f866c64f35d7469a09041f18bd0968b30445..b8357c071e54daaeb583fa58e04bb21b8cc45229 100644
--- a/web/src/components/DDCODE/fetchCondensate.vue
+++ b/web/src/components/DDCODE/fetchCondensate.vue
@@ -30,7 +30,7 @@ export default {
mounted() {
const vm = this;
// /* eslint-disable no-console */
- // console.log(vm.locus);
+
vm.getItems();
},
methods: {
@@ -38,7 +38,7 @@ export default {
const vm = this;
// /* eslint-disable no-console */
- // console.log(vm.incDesc);
+
vm.loading = true;
@@ -48,10 +48,10 @@ export default {
let url = `${host}/condensates/${vm.condensate}`;
- console.log('url is', url);
+
if (vm.condensate && !_.isEmpty(vm.condensate)) {
- // console.log('True');
+
try {
const res = await fetch(url, {
method: 'GET',
@@ -74,29 +74,12 @@ export default {
vm.loading = false;
vm.response = response;
- // console.log(response);
- // if (response && !_.isEmpty(response)) {
- // this.response = _.flatMap(response, (n) => [{ text: n.name, style: 'background-color: ' + n.color }]);
- // }
+
}, 10);
- // .then(response => response.json())
- // .then((response) => {
- // /* eslint-disable no-console */
- // console.log(response);
-
- // setTimeout(() => {
- // vm.loading = false;
- // vm.response = response
-
- // // console.log(response);
- // // if (response && !_.isEmpty(response)) {
- // // this.response = _.flatMap(response, (n) => [{ text: n.name, style: 'background-color: ' + n.color }]);
- // // }
- // }, 10);
- // });
+
} catch (err) {
- console.log('in catch', err.message);
+
vm.loading = false;
vm.response = '';
vm.fetchError = `${err.message} Internal Error, please write a mail to CDCode Admin.`;
diff --git a/web/src/components/DDCODE/fetchProtein.vue b/web/src/components/DDCODE/fetchProtein.vue
index 813415f4cdc940fd9269cce02b8b350547705cca..b722c7384c7ea0c5b8f5633b46054d323c33a93e 100644
--- a/web/src/components/DDCODE/fetchProtein.vue
+++ b/web/src/components/DDCODE/fetchProtein.vue
@@ -34,7 +34,7 @@ export default {
mounted() {
const vm = this;
// /* eslint-disable no-console */
- // console.log(vm.locus);
+
vm.getItems();
},
methods: {
@@ -42,7 +42,7 @@ export default {
const vm = this
// /* eslint-disable no-console */
- // console.log(vm.incDesc);
+
vm.loading = true
@@ -62,7 +62,7 @@ export default {
Authorization: `Bearer ${apikey}`
}
})
- // console.log('protein res', res);
+
if(!res.ok){
vm.loading = false;
vm.response = ''
@@ -74,26 +74,9 @@ export default {
setTimeout(() => {
vm.loading = false;
vm.response = response;
- // console.log(response);
- // if (response && !_.isEmpty(response)) {
- // this.response = _.flatMap(response, (n) => [{ text: n.name, style: 'background-color: ' + n.color }]);
- // }
+
}, 10);
- // .then(response => response.json())
- // .then((response) => {
- // // /* eslint-disable no-console */
- // // console.log(response);
-
- // setTimeout(() => {
- // vm.loading = false;
- // vm.response = response;
-
- // // console.log(response);
- // // if (response && !_.isEmpty(response)) {
- // // this.response = _.flatMap(response, (n) => [{ text: n.name, style: 'background-color: ' + n.color }]);
- // // }
- // }, 10);
- // });
+
}catch(err){
vm.loading = false;
vm.response = ''
diff --git a/web/src/components/DDCODE/fetchPubMed.vue b/web/src/components/DDCODE/fetchPubMed.vue
index 2ea54d31617be66eade38400d97591232a6b1d86..c92ce641323cc070ebe4e52f85ddff1d47db686a 100644
--- a/web/src/components/DDCODE/fetchPubMed.vue
+++ b/web/src/components/DDCODE/fetchPubMed.vue
@@ -25,7 +25,7 @@ export default {
mounted() {
const vm = this
// /* eslint-disable no-console */
- // console.log(vm.locus);
+
vm.getItems();
},
methods: {
@@ -33,7 +33,7 @@ export default {
const vm = this;
const pubMedId = vm.link.substring(vm.link.lastIndexOf('/') + 1);
- // console.log(pubMedId);
+
const request = url + pubMedId;
diff --git a/web/src/components/DDCODE/fetchSpecies.vue b/web/src/components/DDCODE/fetchSpecies.vue
index f7f3ecfa0cc6abd36d907918354e8bbb37fb8c15..a8a2b084212fafe296f0448f3132c94b12af26aa 100644
--- a/web/src/components/DDCODE/fetchSpecies.vue
+++ b/web/src/components/DDCODE/fetchSpecies.vue
@@ -25,14 +25,14 @@
mounted() {
const vm = this
// /* eslint-disable no-console */
- // console.log(vm.locus);
+
vm.getItems();
},
methods: {
getItems() {
const vm = this;
- // console.log(host)
+
if(vm.isDev) {
host = require('../js/const').devHost;
diff --git a/web/src/components/DDCODE/fetchStats.vue b/web/src/components/DDCODE/fetchStats.vue
index 3c16250fadcf534ea8cd046aa24645c04c88574a..af9206e40f65be8032966c7378b2965284956f56 100644
--- a/web/src/components/DDCODE/fetchStats.vue
+++ b/web/src/components/DDCODE/fetchStats.vue
@@ -27,14 +27,14 @@ export default {
mounted() {
const vm = this
// /* eslint-disable no-console */
- // console.log(vm.locus);
+
vm.getItems();
},
methods: {
async getItems() {
const vm = this;
- // console.log(host)
+
if(vm.isDev) {
host = require('../js/const').devHost;
@@ -72,7 +72,7 @@ export default {
// });
}catch(error){
- console.log('true');
+
vm.loading = false;
vm.response = ''
vm.fetchError = `${error.message} Internal Error, please write a mail to CDCode Admin.`
diff --git a/web/src/components/DDCODE/fetchWikiMainPage.vue b/web/src/components/DDCODE/fetchWikiMainPage.vue
index f700796b9006ccc88631297f8ab17585a05b7871..dd8d2a203525740db52cf6b8230c5029dc147657 100644
--- a/web/src/components/DDCODE/fetchWikiMainPage.vue
+++ b/web/src/components/DDCODE/fetchWikiMainPage.vue
@@ -25,14 +25,14 @@ export default {
mounted() {
const vm = this
// /* eslint-disable no-console */
- // console.log(vm.locus);
+
vm.getItems();
},
methods: {
getItems() {
const vm = this;
- // console.log(host)
+
if(vm.isDev) {
host = require('../js/const').devHost;
diff --git a/web/src/components/DataTable.vue b/web/src/components/DataTable.vue
index 6372fe271bc78cc48f125c411ca009485759a891..909855b73d9780209d93869c2fc8e4dcd9dbfc91 100644
--- a/web/src/components/DataTable.vue
+++ b/web/src/components/DataTable.vue
@@ -45,7 +45,7 @@
mounted() {
const vm = this;
vm.createTable(vm.id, vm.data);
- // console.log('in data table condensate data', vm.data);
+
},
// watch: {
// selectedItem: function update(newValue) {
@@ -65,7 +65,7 @@
const url = vm.category === 'protein' ? `/protein/${id}` : `/condensate/${id}`
// eslint-disable-next-line
- // console.log(url)
+
vm.$router.push(url)
// window.location = url
// window.open(url)
@@ -164,16 +164,7 @@
}
},
},
- // {
- // title: 'Proteins',
- // data: 'proteins',
- // fnCreatedCell: (nTd, sData, oData) => {
- // // console.log(sData)
- // if(sData) {
- // $(nTd).html(sData.length > 4 ? sData.splice(0, 4).join(', ') + ' ...' : sData.join(', '));
- // }
- // }
- // },
+
{
title: 'No. Proteins',
render: function ( data, type, row, meta ) {
@@ -195,7 +186,7 @@
return data;
},
fnCreatedCell: (nTd, sData, oData) => {
- // console.log(sData)
+
if(sData) {
$(nTd).html(getRating(sData).join('\n'));
} else {
@@ -220,7 +211,7 @@
const columns = vm.category === 'protein' ? proteinColumns : condensateColumns;
- // console.log(columns)
+
const doms = vm.category === 'protein' ? '<"row"<"col-sm-3"f><"#function_filter.col-sm-3"><"col-sm-6"p>><"row"t><"row"<"col-sm-4"i><"col-sm-8"p>>' : '<"row"<"col-sm-3"f><"col-sm-9"p>><"row"t><"row"<"col-sm-4"i><"col-sm-8"p>>';
@@ -241,7 +232,7 @@
initComplete: function () {
if(vm.category === 'protein') {
this.api().columns([3]).every( function () {
- // console.log(this);
+
let column = this;
let select = $('<select class="form-control input-sm"><option value=""></option></select>')
.appendTo( $('#function_filter').empty() )
@@ -294,7 +285,7 @@
e.preventDefault()
const tr = $(e.target).parent().parent();
const row = table.row(tr);
- // console.log(row.data().proteinName)
+
if (vm.category === 'protein') {
vm.moveDetailPage(row.data().uniprot_id);
} else {
diff --git a/web/src/components/Datatable/CondensateDataTable.vue b/web/src/components/Datatable/CondensateDataTable.vue
index c3e0398e44c327eadcd5ef96f0f1f8ceacd1631d..c5d2cbc11273ae81675231dc7484f6b3dabf4cf6 100644
--- a/web/src/components/Datatable/CondensateDataTable.vue
+++ b/web/src/components/Datatable/CondensateDataTable.vue
@@ -98,7 +98,7 @@ export default {
// title: 'Proteins',
// data: 'proteins',
// fnCreatedCell: (nTd, sData, oData) => {
- // // console.log(sData)
+ //
// if (sData) {
// $(nTd).html(
// sData.length > 4
@@ -133,7 +133,7 @@ export default {
return data;
},
fnCreatedCell: (nTd, sData, oData) => {
- // console.log(sData)
+
if (sData) {
$(nTd).html(getRating(sData).join('\n'));
} else {
@@ -191,16 +191,13 @@ export default {
async fetchCallback(data, aoData, fnCallback) {
let vm = this;
- // console.log(aoData)
+
let orderItem = aoData.find((x) => x.name === 'order');
let startItem = aoData.find((x) => x.name === 'start');
let lengthItem = aoData.find((x) => x.name === 'length');
let searchItem = aoData.find((x) => x.name === 'search');
let functionalType = aoData.find((x) => x.name === 'columns').value[3];
- // console.log(functionalType.search.value)
-
- // console.log(`length = ${lengthItem.value}, offset = ${startItem.value}`)
- // console.log(`orderItem = ${orderItem.value}, searchItem = ${searchItem.value.value}`)
+
const page = startItem.value / lengthItem.value + 1;
@@ -216,14 +213,14 @@ export default {
let order = [];
if (orderItem.value.length > 0) {
orderItem.value.forEach(function (data) {
- // console.log(data)
+
if (data.dir === 'desc') {
order.push(`-${columns[data.column]}`);
} else {
order.push(`${columns[data.column]}`);
}
});
- // console.log(order)
+
}
if (vm.isDev) {
@@ -277,7 +274,7 @@ export default {
fnCallback(dat);
}
} catch (error) {
- // console.log('error', error);
+
this.error = true;
this.errorMsg =
error.response.data.error.message +
@@ -340,7 +337,7 @@ export default {
link.click();
}
} catch (error) {
- // console.error(error)
+
this.error = true;
this.errorMsg = 'You are not authorized to access this item.';
}
diff --git a/web/src/components/Datatable/ProteinDataTable.vue b/web/src/components/Datatable/ProteinDataTable.vue
index c000335c45005ee2b5b95b0fd1d93975cf6c7e4d..978bb7745f558280055651b35411f0c8299e2dc0 100644
--- a/web/src/components/Datatable/ProteinDataTable.vue
+++ b/web/src/components/Datatable/ProteinDataTable.vue
@@ -43,7 +43,7 @@ export default {
mounted() {
const vm = this;
vm.createTable(vm.id);
- // console.log('in data table condensate data', vm.data);
+
},
methods: {
@@ -133,7 +133,7 @@ export default {
this.api()
.columns([3])
.every(function () {
- // console.log(this);
+
let column = this;
let select = $(
'<select class="form-control input-sm"><option value=""></option>' +
@@ -147,7 +147,7 @@ export default {
.on('change', function () {
var val = $.fn.dataTable.util.escapeRegex($(this).val());
- // console.log(val)
+
// column
// .search( val ? val === 'null' ? '^\\s*$' : '^'+val+'$' : '', true, false )
@@ -186,16 +186,13 @@ export default {
async fetchCallback(data, aoData, fnCallback) {
let vm = this;
- // console.log(aoData)
+
let orderItem = aoData.find((x) => x.name === 'order');
let startItem = aoData.find((x) => x.name === 'start');
let lengthItem = aoData.find((x) => x.name === 'length');
let searchItem = aoData.find((x) => x.name === 'search');
let functionalType = aoData.find((x) => x.name === 'columns').value[3];
- // console.log(functionalType.search.value)
- // console.log(`length = ${lengthItem.value}, offset = ${startItem.value}`)
- // console.log(`orderItem = ${orderItem.value}, searchItem = ${searchItem.value.value}`)
const page = startItem.value / lengthItem.value + 1;
@@ -212,14 +209,14 @@ export default {
let order = [];
if (orderItem.value.length > 0) {
orderItem.value.forEach(function (data) {
- // console.log(data)
+
if (data.dir === 'desc') {
order.push(`-${columns[data.column]}`);
} else {
order.push(`${columns[data.column]}`);
}
});
- // console.log(order)
+
}
if (vm.isDev) {
@@ -268,7 +265,7 @@ export default {
fnCallback(dat);
}
} catch (error) {
- // console.error(error)
+
this.error = true;
this.errorMsg =
error.response.data.error.message +
@@ -323,7 +320,7 @@ export default {
link.click();
}
} catch (error) {
- // console.error(error)
+
this.error = true;
this.errorMsg = 'You are not authorized to access this item.';
}
diff --git a/web/src/components/EditProteinDetails.vue b/web/src/components/EditProteinDetails.vue
index f51028daf3661605c02d880303feaf2a51b08636..08e123ba61a88d84459d4dec1949c59cfc308e22 100644
--- a/web/src/components/EditProteinDetails.vue
+++ b/web/src/components/EditProteinDetails.vue
@@ -275,7 +275,7 @@ export default {
let url = `${host}/api/update-items`;
let canonicalId = responceData.condensates[0].canonical_id;
- console.log(canonicalId);
+
let data = {
Entity: 'condensate',
EntityId: canonicalId,
@@ -285,7 +285,7 @@ export default {
Status: 'requested',
};
- console.log(data);
+
try {
await this.axios.post(
@@ -299,7 +299,7 @@ export default {
);
this.message = 'Request submitted successfully!';
} catch (e) {
- console.error(e);
+
this.serverError = true;
this.message =
e.message || 'Something went wrong, please try again later!';
@@ -307,7 +307,7 @@ export default {
},
fetchPubMedId(item) {
const vm = this;
- // console.log(item)
+
const url =
'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=';
const request = url + item;
diff --git a/web/src/components/Footers.vue b/web/src/components/Footers.vue
index 6d8d672ddb678f7c4fe719bb97df15c3425074be..7ae1c417607bd7a761e273f990b6f8b2fc981c44 100644
--- a/web/src/components/Footers.vue
+++ b/web/src/components/Footers.vue
@@ -190,7 +190,7 @@
export default {
name: 'Footer',
mounted: function () {
- // console.log(this.$route.name)
+
},
};
</script>
diff --git a/web/src/components/LandingPage.vue b/web/src/components/LandingPage.vue
index bf6fce9e926ec734e19c43da3d58c6fa08b0d70b..5921c3cce0ecd1b31ea31e173d508b266cebd091 100644
--- a/web/src/components/LandingPage.vue
+++ b/web/src/components/LandingPage.vue
@@ -408,7 +408,7 @@ export default {
);
this.$store.dispatch('Param/removeProtein', idx);
obj.deleteTag();
- // console.log(this.$store.getters['Param/proteinList'])
+
},
},
},
@@ -416,8 +416,7 @@ export default {
selected: {
handler: function (key) {
this.keyword = key;
- // console.log(key);
- // this.searchWithKeyword();
+
},
deep: true,
},
@@ -432,16 +431,13 @@ export default {
},
suggestion: {
handler: function (val) {
- console.log(val);
+
// this.searchWithKeyword();
},
},
},
mounted() {
- // console.log(this.keyword)
- // console.log(this.$route)
- // console.log(this.$route.query)
- // console.log(this.$route.query.q)
+
this.search(this.$route.query.q, this.$route.query.t, this.$route.query.s);
window.twttr = (function (d, s, id) {
@@ -519,8 +515,7 @@ export default {
? `${host}/${vm.pick}s?fields=gene_name,name,uniprot_id,species_name&query=${query}&size=20000`
: `${host}/${vm.pick}s?fields=gene_name,name,uniprot_id,species_name&query=${query}&species_tax_id=${taxId}&size=10000`;
- // console.log(process.env.VUE_APP_TITLE)
- // console.log(process.env.VUE_APP_API_KEY)
+
return fetch(url, {
method: 'GET',
@@ -532,7 +527,7 @@ export default {
})
.then((response) => response.json())
.then((json) => {
- // console.log(json.data);
+
const ret = _.uniqBy(
_.map(json.data, (c) => {
if (c.gene_name) {
@@ -561,15 +556,14 @@ export default {
ret.push({ id: '#' + query, type: 'search' });
}
- // console.log(ret);
+
return ret;
});
},
searchWithKeyword() {
const vm = this;
- // console.log(/\((\d+)\)$/gm.exec(vm.species))
- // console.log(vm.species);
+
const taxId =
vm.species === 'All'
? 'all'
@@ -577,10 +571,7 @@ export default {
? 'null'
: /\((\d+)\)$/gm.exec(vm.species)[1];
const page = 1;
- // console.log(`http://${host}/proteins?query=${vm.keyword}&species_tax_id=${taxId}&page=${page}`)
- // vm.searchKeyword = vm.keyword;
- // console.log(vm.pick)
- // vm.searchPick = vm.pick;
+
vm.$router.replace({
name: 'home',
@@ -600,14 +591,11 @@ export default {
},
});
- // vm.search(this.$route.query.q, this.$route.query.t, this.$route.query.s)
- // /* eslint-disable no-console */
- // console.log(this.searchKeyword)
+
},
search(q, t, s) {
const vm = this;
- // const page = 1;
- // console.log(`http://${host}/proteins?query=${vm.keyword}&species_tax_id=${taxId}&page=${page}`)
+
if (q) {
vm.keyword = q;
vm.searchKeyword = vm.keyword;
@@ -617,19 +605,13 @@ export default {
vm.speciesOption = s;
}
- // console.log(vm.pick)
+
if (t) {
vm.searchPick = t;
vm.pick = t;
}
- // if (t === 'protein') {
- // vm.$refs.search.fetchProteinList(q, s);
- // } else if (t === 'condensate') {
- // vm.$refs.search.fetchCondensateList(q, s);
- // }
- // /* eslint-disable no-console */
- // console.log(this.searchKeyword)
+
},
},
};
diff --git a/web/src/components/Links.vue b/web/src/components/Links.vue
index 23f8e89730411a9ae3fe714112aeb7d10930f191..85cd48ca4dce6d927fbc87ea6c5db5cfe6e68783 100644
--- a/web/src/components/Links.vue
+++ b/web/src/components/Links.vue
@@ -215,11 +215,7 @@ export default {
mounted: function () {
const vm = this;
- // console.log(vm.userData)
- // console.log(this.$route.name)
- // if(vm.userData !== null) {
- // vm.$router.push('/profile')
- // }
+
},
methods: {
openCondensateMenu() {
diff --git a/web/src/components/LlpsTable.vue b/web/src/components/LlpsTable.vue
index bae38aba2c47395c344355d7490ce0ec0afff567..bdc97a2818b149de53e4fa4445acf03104ef7145 100644
--- a/web/src/components/LlpsTable.vue
+++ b/web/src/components/LlpsTable.vue
@@ -134,7 +134,7 @@ export default {
// eslint-disable-next-line
const url = `/protein/${uniprot_id}`;
// // eslint-disable-next-line
- // console.log(url)
+
// this.$router.push(url)
// window.open(url);
vm.$router.push(url);
@@ -144,7 +144,7 @@ export default {
// eslint-disable-next-line
const url = `https://www.uniprot.org/uniprot/${uniprot_id}`;
// // eslint-disable-next-line
- // console.log(url)
+
// window.open(url);
vm.$router.push(url);
},
@@ -161,7 +161,7 @@ export default {
</a>`;
},
fetchPubMedId(item) {
- // console.log(item)
+
if (item) {
const url =
'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=';
@@ -257,7 +257,7 @@ export default {
// data: 'species_name',
// className: "text-nowrap",
// fnCreatedCell: (nTd, sData, oData) => {
- // // console.log(sData)
+ //
// let data = vm.map[oData.uniprot_id];
// if(data) {
// // $(nTd).html(data.filter(a => a.startsWith('http')).join('\n'));
@@ -284,7 +284,7 @@ export default {
}
},
fnCreatedCell: (nTd, sData, oData) => {
- // console.log(sData)
+
if (vm.pubmed) {
let data = vm.pubmed[oData.uniprot_id];
@@ -308,7 +308,7 @@ export default {
// className: 'whitespace-normal',
// defaultContent: '<i>No data</i>',
// render: function (data, type, row, meta) {
- // // console.log(_.flatMap(row.condensates, c => c.data_sources))
+ //
// if(!vm.proteinFunctionalType){
// return;
// }
@@ -327,7 +327,7 @@ export default {
// className: 'whitespace-normal',
// defaultContent: '<i>No data</i>',
// render: function (data, type, row, meta) {
- // // console.log(_.flatMap(row.condensates, c => c.data_sources))
+ //
// if(!vm.proteinExperimentalEvidence){
// return;
// }
@@ -345,7 +345,7 @@ export default {
// className: 'whitespace-normal',
// defaultContent: '<i>No data</i>',
// render: function (data, type, row, meta) {
- // // console.log(_.flatMap(row.condensates, c => c.data_sources))
+ //
// if(!vm.proteinDriverCriterion){
// return
// }
@@ -362,7 +362,7 @@ export default {
// data: 'uniprot_id',
// className: 'text-nowrap',
// render: function (data, type, row, meta) {
- // // console.log(_.flatMap(row.condensates, c => c.data_sources))
+ //
// let dat = vm.dbTags[row.uniprot_id];
// if (dat) {
// return dat.join(', ');
@@ -392,7 +392,7 @@ export default {
className: 'text-nowrap',
data: 'uniprot_id',
render: function (data, type, row, meta) {
- // console.log(_.flatMap(row.condensates, c => c.data_sources))
+
let dat = vm.map[row.uniprot_id];
if (dat) {
return dat;
@@ -400,7 +400,7 @@ export default {
return '';
},
fnCreatedCell: (nTd, sData, oData) => {
- // console.log(sData)
+
let data = vm.map[oData.uniprot_id];
if (data) {
$(nTd).html(getRating(data).join('\n'));
@@ -477,7 +477,7 @@ export default {
// data: 'uniprot_id',
// className: "text-nowrap",
// fnCreatedCell: (nTd, sData, oData) => {
- // // console.log(sData)
+ //
// let data = vm.map[oData.uniprot_id];
//
// if(data) {
@@ -510,7 +510,7 @@ export default {
}
},
fnCreatedCell: (nTd, sData, oData) => {
- // console.log(sData)
+
if (vm.pubmed) {
let data = vm.pubmed[oData.uniprot_id];
if (data) {
@@ -533,7 +533,7 @@ export default {
className: 'whitespace-normal break-words',
render: function (data, type, row, meta) {
- // console.log(_.flatMap(row.condensates, c => c.data_sources))
+
if (!vm.proteinFunctionalType) {
return;
}
@@ -552,7 +552,7 @@ export default {
className: 'whitespace-normal break-words',
render: function (data, type, row, meta) {
- // console.log(_.flatMap(row.condensates, c => c.data_sources))
+
if (!vm.proteinExperimentalEvidence) {
return;
}
@@ -574,7 +574,7 @@ export default {
className: 'whitespace-normal break-words',
render: function (data, type, row, meta) {
- // console.log(_.flatMap(row.condensates, c => c.data_sources))
+
if (!vm.proteinDriverCriterion) {
return;
}
@@ -594,7 +594,7 @@ export default {
// data: 'uniprot_id',
// className: 'whitespace-normal',
// render: function (data, type, row, meta) {
- // // console.log(_.flatMap(row.condensates, c => c.data_sources))
+ //
// let dat = vm.dbTags[row.uniprot_id];
// if (dat) {
// return dat.join(', ');
@@ -625,10 +625,10 @@ export default {
data: 'uniprot_id',
name: 'confidenceScore',
render: function (data, type, row, meta) {
- // console.log(_.flatMap(row.condensates, c => c.data_sources))
+
let dat = vm.map[row.uniprot_id];
if (dat) {
- // console.log(getRatingValue(vm.map[row.uniprot_id]))
+
return dat;
}
return '';
@@ -829,7 +829,7 @@ export default {
});
$(tableBody).on('mouseover', 'tr td a.pubmed-link', (e) => {
e.preventDefault();
- // console.log(e.target.id)
+
vm.fetchPubMedId(e.target.id);
});
$('#download').on('click', (e) => {
diff --git a/web/src/components/Navigation/TheNavBar.vue b/web/src/components/Navigation/TheNavBar.vue
index f151ccd2b95e09e2a7ca22001334caebd9b15f83..65ae94aa327ad8576d911bd105c129148b81f0bf 100644
--- a/web/src/components/Navigation/TheNavBar.vue
+++ b/web/src/components/Navigation/TheNavBar.vue
@@ -550,6 +550,8 @@ export default {
let url = `${host}/api/novel-condensate/synced`;
+
+
vm.axios.get(
url,
).then((dat) => {
diff --git a/web/src/components/NovelCondensateRequests.vue b/web/src/components/NovelCondensateRequests.vue
index cf7be23c1b53b2743f19dce8d185f39189afb0f8..01783ed67df7ec2bdcd6b98230bf15ff8ddc1271 100644
--- a/web/src/components/NovelCondensateRequests.vue
+++ b/web/src/components/NovelCondensateRequests.vue
@@ -114,7 +114,7 @@ export default {
},
fnCreatedCell: (nTd, sData, oData) => {
if(sData) {
- // console.log(oData)
+
// $(nTd).html(`${oData.attributes.submittedBy.data.id}`);
$(nTd).html(`<a class='resource-link' href="/updateuser/${oData.attributes.submittedBy.data.id}">${sData.data.attributes.username}</a>`);
}
@@ -207,13 +207,12 @@ export default {
async fetchCallback(data, aoData, fnCallback) {
let vm = this;
- // console.log(aoData)
+
let orderItem = aoData.find((x) => x.name === 'order');
let startItem = aoData.find((x) => x.name === 'start');
let lengthItem = aoData.find((x) => x.name === 'length');
let searchItem = aoData.find((x) => x.name === 'search');
- // console.log(`length = ${lengthItem.value}, offset = ${startItem.value}`)
- // console.log(`orderItem = ${orderItem.value}, searchItem = ${searchItem.value.value}`)
+
const page = startItem.value / lengthItem.value + 1;
@@ -245,10 +244,10 @@ export default {
let order = ['SubmittedAt:desc'];
if (orderItem.value.length > 0) {
orderItem.value.forEach(function (data) {
- // console.log(data)
+
order = `${columns[data.column]}:${data.dir}`;
});
- // console.log(order)
+
}
query['sort'] = order;
diff --git a/web/src/components/ProteinDetailPage.vue b/web/src/components/ProteinDetailPage.vue
index 0082d706c22ec3a85701a8ab795c904c2f516781..9e384fda8bcb5c5c77ea26cca7ef737a2f16417d 100644
--- a/web/src/components/ProteinDetailPage.vue
+++ b/web/src/components/ProteinDetailPage.vue
@@ -556,7 +556,7 @@ export default {
computed: {
getUserData() {
const userRole = this.$store.getters['User/userRole'];
- // console.log('role is', userRole);
+
return userRole;
},
},
@@ -611,7 +611,7 @@ export default {
},
fetchPubMedId(item) {
const vm = this;
- // console.log(item)
+
const url =
'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=';
const request = url + item;
@@ -727,31 +727,14 @@ export default {
this.toasterIsOpen = false;
}, 2000);
} catch (e) {
- console.error(e);
+
this.message =
e.message || 'Something went wrong, please try again later!';
this.isSubmitted = true;
this.error = true;
}
- // try {
- // const res=await this.axios.get(
- // `${host}
- // /api/update-item/findCondensate/${response.data.canonical_id}`,
- // {
- // headers: {
- // Authorization: `Bearer ${this.jwt}`,
- // },
- // }
- // );
-
- // console.log(await res)
-
- // } catch (e) {
- // console.error(e);
-
- // }
},
},
};
diff --git a/web/src/components/ProteinExample.vue b/web/src/components/ProteinExample.vue
index 4940eca81937bed6dad98fb5b0453aabffc9b394..3137b63b1d2376f01bd1723cfeef7c21308e9169 100644
--- a/web/src/components/ProteinExample.vue
+++ b/web/src/components/ProteinExample.vue
@@ -11,7 +11,7 @@ export default {
ProteinDetailPage
},
mounted: function () {
- // console.log(this.$route.name)
+
}
}
</script>
\ No newline at end of file
diff --git a/web/src/components/ProteinUpdateItemTable.vue b/web/src/components/ProteinUpdateItemTable.vue
index f2a802c62fe8e7d79bdc1776085c09eab674c490..b05998e1dfe0a8f1dc237453478382a9d89459db 100644
--- a/web/src/components/ProteinUpdateItemTable.vue
+++ b/web/src/components/ProteinUpdateItemTable.vue
@@ -214,13 +214,12 @@ export default {
async fetchCallback(data, aoData, fnCallback) {
let vm = this;
- // console.log(aoData)
+
let orderItem = aoData.find((x) => x.name === 'order');
let startItem = aoData.find((x) => x.name === 'start');
let lengthItem = aoData.find((x) => x.name === 'length');
let searchItem = aoData.find((x) => x.name === 'search');
- // console.log(`length = ${lengthItem.value}, offset = ${startItem.value}`)
- // console.log(`orderItem = ${orderItem.value}, searchItem = ${searchItem.value.value}`)
+
const page = startItem.value / lengthItem.value + 1;
@@ -254,10 +253,10 @@ export default {
let order = ['SubmittedAt:desc'];
if (orderItem.value.length > 0) {
orderItem.value.forEach(function (data) {
- // console.log(data)
+
order = `${columns[data.column]}:${data.dir}`;
});
- // console.log(order)
+
}
query['sort'] = order;
@@ -299,19 +298,13 @@ export default {
});
let url = `${host}/api/update-item/filterProteinRequest/${vm.data}?${queryString}`;
- // console.log('protein udate', url);
+
const jwt = vm.jwt;
if (jwt === null) {
return;
}
- // let dat = {
- // draw: aoData.draw,
-
- // data: vm.data
- // }
-
- // fnCallback(dat)
+
try {
const res = await this.axios.get(url, {
diff --git a/web/src/components/Search.vue b/web/src/components/Search.vue
index 3a48bf0ffb72f9204d38d8ade7b24a6e71a2005f..b2fdb66ed53b3b3d33ac2e787d51c50dfc488cea 100644
--- a/web/src/components/Search.vue
+++ b/web/src/components/Search.vue
@@ -28,7 +28,7 @@
const vm = this
// /* eslint-disable no-console */
- // console.log(vm.incDesc);
+
vm.loading = true
@@ -52,16 +52,13 @@
.then(response => response.json())
.then((response) => {
// /* eslint-disable no-console */
- // console.log(response);
+
setTimeout(() => {
vm.loading = false;
vm.response = response
- // console.log(response);
- // if (response && !_.isEmpty(response)) {
- // this.response = _.flatMap(response, (n) => [{ text: n.name, style: 'background-color: ' + n.color }]);
- // }
+
}, 10);
});
} else {
@@ -79,16 +76,13 @@
.then(response => response.json())
.then((response) => {
// /* eslint-disable no-console */
- // console.log(response);
+
setTimeout(() => {
vm.loading = false;
vm.response = response
- // console.log(response);
- // if (response && !_.isEmpty(response)) {
- // this.response = _.flatMap(response, (n) => [{ text: n.name, style: 'background-color: ' + n.color }]);
- // }
+
}, 10);
});
}
@@ -97,7 +91,7 @@
const vm = this
// /* eslint-disable no-console */
- // console.log(vm.incDesc);
+
vm.loading = true
@@ -126,16 +120,13 @@
.then(response => response.json())
.then((response) => {
// /* eslint-disable no-console */
- // console.log(response);
+
setTimeout(() => {
vm.loading = false;
vm.response = response
- // console.log(response);
- // if (response && !_.isEmpty(response)) {
- // this.response = _.flatMap(response, (n) => [{ text: n.name, style: 'background-color: ' + n.color }]);
- // }
+
}, 10);
});
} else {
@@ -152,13 +143,13 @@
.then(response => response.json())
.then((response) => {
// /* eslint-disable no-console */
- // console.log(response);
+
setTimeout(() => {
vm.loading = false;
vm.response = response
- // console.log(response);
+
// if (response && !_.isEmpty(response)) {
// this.response = _.flatMap(response, (n) => [{ text: n.name, style: 'background-color: ' + n.color }]);
// }
diff --git a/web/src/components/SearchPage.vue b/web/src/components/SearchPage.vue
index 581c0abfe4ff344b2df072c2029fa8e6a0c2b185..140041f91b132ba6768e388405c46138b829341f 100644
--- a/web/src/components/SearchPage.vue
+++ b/web/src/components/SearchPage.vue
@@ -73,10 +73,7 @@ export default {
};
},
mounted() {
- // console.log(this.keyword)
- // console.log(this.$route)
- // console.log(this.$route.query)
- // console.log(this.$route.query.q)
+
this.searchWithKeyword(
this.$route.query.q,
this.$route.query.t,
@@ -102,8 +99,7 @@ export default {
? `${host}/${vm.pick}s?query=${query}&size=10000`
: `${host}/${vm.pick}s?query=${query}&species_tax_id=${taxId}&size=10000`;
- // console.log(process.env.VUE_APP_TITLE)
- // console.log(process.env.VUE_APP_API_KEY)
+
return fetch(url, {
method: 'GET',
@@ -119,9 +115,9 @@ export default {
searchWithKeyword(q, t, s) {
const vm = this;
// const page = 1;
- // console.log(`http://${host}/proteins?query=${vm.keyword}&species_tax_id=${taxId}&page=${page}`)
+
vm.keyword = q;
- // console.log(vm.pick)
+
vm.searchPick = t;
if (t === 'protein') {
@@ -164,7 +160,7 @@ export default {
}
}
// /* eslint-disable no-console */
- // console.log(this.searchKeyword)
+
},
},
};
diff --git a/web/src/components/SpeciesChart.vue b/web/src/components/SpeciesChart.vue
index 80cc981533b03056bf96031ad156622caa13fd88..110e8d77ce4e7ba816b188510aabd89f26de9901 100644
--- a/web/src/components/SpeciesChart.vue
+++ b/web/src/components/SpeciesChart.vue
@@ -56,7 +56,7 @@ export default {
const chart = am4core.create(chartRef, am4charts.PieChart3D);
chart.hiddenState.properties.opacity = 0; // this creates initial fade-in
- // console.log(series);
+
const filter = 10;
let d = _.filter(data, c => c.count > filter)
diff --git a/web/src/components/TagsInput.vue b/web/src/components/TagsInput.vue
index 37849c83d5366727ca498c2fceabf7669519a97c..bcfd241e9ef2a67e5fc04d331c32cc4e3a953149 100644
--- a/web/src/components/TagsInput.vue
+++ b/web/src/components/TagsInput.vue
@@ -588,7 +588,7 @@ export default {
return { valid: true, msg: "Valid Uniprot ID." };
}
} catch (err) {
- console.log("error", err);
+
return {
valid: false,
msg:
diff --git a/web/src/components/UI/TheDeleteModal.vue b/web/src/components/UI/TheDeleteModal.vue
index 29e6033f321be1c66f13528ff9b749c6f60ed832..4f0fb9408ec5e9067652fab6fcd3dc767ff09a9b 100644
--- a/web/src/components/UI/TheDeleteModal.vue
+++ b/web/src/components/UI/TheDeleteModal.vue
@@ -236,7 +236,7 @@ export default {
async deleteUniprotIdReq() {
const vm = this;
- // console.log(host)
+
if (vm.isDev) {
host = require('../js/const').devApiHost;
@@ -295,7 +295,7 @@ export default {
this.comment = '';
} catch (e) {
- console.error(e);
+
this.isLoading = false;
this.error = true;
this.message =
diff --git a/web/src/components/UpdateItemTable.vue b/web/src/components/UpdateItemTable.vue
index e4b946eafd2f81ddf26c95264c6c50313aa0d823..0612f2e86f3fde38aa460996d2434bae29359fbe 100644
--- a/web/src/components/UpdateItemTable.vue
+++ b/web/src/components/UpdateItemTable.vue
@@ -163,7 +163,7 @@ export default {
},
fnCreatedCell: (nTd, sData, oData) => {
if(sData) {
- // console.log(oData)
+
// $(nTd).html(`${oData.attributes.submittedBy.data.id}`);
$(nTd).html(`<a class='resource-link' href="/updateuser/${oData.attributes.submittedBy.data.id}">${sData.data.attributes.username}</a>`);
}
@@ -236,14 +236,13 @@ export default {
async fetchCallback(data, aoData, fnCallback) {
let vm = this;
- // console.log(aoData)
+
let orderItem = aoData.find((x) => x.name === 'order');
let startItem = aoData.find((x) => x.name === 'start');
let lengthItem = aoData.find((x) => x.name === 'length');
let searchItem = aoData.find((x) => x.name === 'search');
- // console.log(`length = ${lengthItem.value}, offset = ${startItem.value}`)
- // console.log(`orderItem = ${orderItem.value}, searchItem = ${searchItem.value.value}`)
+
const page = startItem.value / lengthItem.value + 1;
@@ -277,10 +276,10 @@ export default {
let order = ['SubmittedAt:desc'];
if (orderItem.value.length > 0) {
orderItem.value.forEach(function (data) {
- // console.log(data)
+
order = `${columns[data.column]}:${data.dir}`;
});
- // console.log(order)
+
}
query['sort'] = order;
@@ -350,7 +349,7 @@ export default {
fnCallback(dat);
}
} catch (error) {
- // console.error(error)
+
this.error = true;
this.errorMsg = 'You are not authorized to access this item.';
// setTimeout(() => vm.$router.go(-1), 2000);
diff --git a/web/src/views/AddNewCondensate.vue b/web/src/views/AddNewCondensate.vue
index b08c4afe01ca25f3af7e87e537999ec8fda4e4f7..f3cfa761ff025def9dc96b73022d14d674ed9654 100644
--- a/web/src/views/AddNewCondensate.vue
+++ b/web/src/views/AddNewCondensate.vue
@@ -169,7 +169,7 @@ export default {
this.toasterIsOpen = false;
}, 2000);
} catch (e) {
- console.error(e);
+
this.message =
e.message || 'Something went wrong, please try again later!';
this.isSubmitted = true;
diff --git a/web/src/views/ForgotPassword.vue b/web/src/views/ForgotPassword.vue
index cb470967087317266116373465ba2226ebf34bd1..db79cd4fe2626c6aac77945ef2415e3500796151 100644
--- a/web/src/views/ForgotPassword.vue
+++ b/web/src/views/ForgotPassword.vue
@@ -213,7 +213,7 @@ export default {
this.error = false;
this.toasterIsOpen = true;
} catch (err) {
- console.log(err);
+
this.isLoading = false;
this.error = true;
this.errorMsg = `Internal Error, please write a mail to CDCode Admin`;
diff --git a/web/src/views/Login.vue b/web/src/views/Login.vue
index 99b8bf99a97260421937c08c22454f59ddca6764..94159919cd595e94df216c0948f41315e469ccfe 100644
--- a/web/src/views/Login.vue
+++ b/web/src/views/Login.vue
@@ -199,7 +199,7 @@ export default {
if (vm.isDev) {
host = require("@/components/js/const").devApiHost;
}
- console.log("url is", host);
+
this.isLoading = true;
try {
const res = await fetch(`${host}/api/auth/local`, {
@@ -250,34 +250,13 @@ export default {
this.error = false;
this.$router.push("/profile");
} catch (err) {
- console.log("catch error", err);
+
this.isLoading = false;
this.error = true;
this.errorMsg = `${err.message} Internal Error, please write a mail to CDCode Admin`;
}
- // const res = await this.axios.post(`${host}/api/auth/local`, {
- // identifier: this.email.val,
- // password: this.password.val
- // });
- // console.log("error is ", res);
- // const { jwt, user } = res.data
- // console.log(user)
- // window.localStorage.setItem('jwt', jwt)
- // window.localStorage.setItem('userData', JSON.stringify(user))
-
- // this.$store.dispatch('User/setJwt', jwt)
- // this.$store.dispatch('User/setUserData', user)
- // this.isLoading= false;
- // this.error= false;
- // this.$router.push('/profile')
-
- // console.log(error.response.data.error.message)
- // console.log("error",e.data);
- // this.isLoading= false;
- // this.error = true
- // this.password.val = ''
- // this.isLoading= false
+
},
},
};
diff --git a/web/src/views/NotFound.vue b/web/src/views/NotFound.vue
index 97ffd891cd3fd8d31581acd93eedc58656764113..c05bbc9c1e7fb811162edc6770bf7841c32772f9 100644
--- a/web/src/views/NotFound.vue
+++ b/web/src/views/NotFound.vue
@@ -1,7 +1,7 @@
<template>
<div class="flex flex-wrap justify-center">
<div class="w-5/6">
- <h3>Page Not Found</h3>
+ <h3>404 Page Not Found!</h3><router-link class="text-blue-500 text-3xl hover:text-blue-700" to="/">Click here to go back.</router-link>
</div>
</div>
</template>
diff --git a/web/src/views/NovelCondensate.vue b/web/src/views/NovelCondensate.vue
index 5cef85250bb1f9cc61d87ce45599491c8cf72e48..acf59571b2b1686898ed3a672034000641085d8c 100644
--- a/web/src/views/NovelCondensate.vue
+++ b/web/src/views/NovelCondensate.vue
@@ -391,14 +391,16 @@ export default {
return this.$store.getters['User/userRole'];
},
colorChange() {
- if (this.status === 'rejected') {
+ if (this.status === 'rejected') {
return `bg-red-500`;
} else if (this.status === 'requested') {
- return `bg-yellow-500`;
+ return `bg-pink-500`;
} else if (this.status === 'synced') {
- return `bg-gray-500`;
+ return `bg-blue-500`;
} else if (this.status === 'accepted') {
return `bg-green-500`;
+ } else if (this.status === 'failed') {
+ return `bg-gray-500`;
}
return '';
},
@@ -475,7 +477,7 @@ export default {
return;
}
- // console.log(vm.userData)
+
vm.isLoading = true;
try {
const res = await this.axios.get(
@@ -513,7 +515,7 @@ export default {
vm.isLoading = false;
// vm.loaded = true;
} catch (error) {
- // console.error(error)
+
this.error = true;
this.errorMsg = 'You are not authorized to access this item.';
vm.isLoading = false;
@@ -522,10 +524,10 @@ export default {
},
async updateReview() {
const vm = this;
- // console.log('triggered');
+
vm.validation();
if (!this.formIsValid) {
- // console.log('true');
+
return;
}
@@ -539,12 +541,12 @@ export default {
return;
}
- // console.log(vm.userData)
+
let dat = {
Status: this.reviewerStatus.val,
ReviewComments: this.reviewerComments.val,
};
- // console.log('data is', dat);
+
this.isLoading = true;
try {
await this.axios
@@ -560,7 +562,7 @@ export default {
}
)
.then((res) => {
- // console.log(res);
+
this.error = false;
this.reviewComments = '';
this.isLoading = false;
@@ -571,7 +573,7 @@ export default {
}, 2000);
})
.catch((err) => {
- // console.log(err);
+
this.error = true;
this.errorMsg =
err.response.data.error.message +
@@ -579,10 +581,9 @@ export default {
vm.isLoading = false;
});
- // console.log(res)
+
} catch (error) {
- // console.log(error.response.data.error.message)
- // console.log(error.response)
+
this.error = true;
this.errorMsg = error;
vm.isLoading = false;
diff --git a/web/src/views/Profile.vue b/web/src/views/Profile.vue
index 138fed2101cd3ea047ba67f2bc8d12c13227fd1b..34e46ed35ef7ee41949c0ee69afeff21116a4a68 100644
--- a/web/src/views/Profile.vue
+++ b/web/src/views/Profile.vue
@@ -596,7 +596,7 @@ export default {
this.editMode = true;
},
setRole(roleName) {
- //console.log("role name is,", roleName);
+
const vm = this;
window.localStorage.setItem('roleName', roleName);
vm.$store.dispatch('User/setUserRole', roleName);
@@ -608,7 +608,7 @@ export default {
return ret;
},
async update(e) {
- // console.log("user data", e);
+
const vm = this;
if (vm.isDev) {
@@ -670,13 +670,7 @@ export default {
this.scientificErrMsg = '';
this.profileLinkErrMsg = '';
this.passwordErrMsg = '';
- // let dat = {
- // id: vm.user,
- // profile_link: vm.profile_link,
- // scientific_discipline: vm.selected,
- // password: vm.password,
- // };
- // console.log(dat);
+
try {
let res;
@@ -686,7 +680,7 @@ export default {
Authorization: `Bearer ${jwt}`,
},
});
- // console.log(res.data);
+
const newJwt = res.data.jwt;
window.localStorage.setItem('jwt', newJwt);
this.$store.dispatch('User/setJwt', newJwt);
@@ -698,7 +692,7 @@ export default {
});
}
- // console.log(res.data);
+
this.error = false;
this.toasterMessage = 'Profile update successful!';
this.toasterIsOpen = true;
@@ -712,8 +706,7 @@ export default {
this.password = '';
this.updatedKey += 1;
} catch (error) {
- // console.log(error.response.data.error.message)
- // console.log(error.response)
+
this.error = true;
this.errorMsg = error;
}
diff --git a/web/src/views/SignUp.vue b/web/src/views/SignUp.vue
index 4e607fa15a8ff3ffeb0c1adfc5782398b7f42cfe..57ded675791621617c1e963165fe8c7d2995fb5d 100644
--- a/web/src/views/SignUp.vue
+++ b/web/src/views/SignUp.vue
@@ -683,34 +683,14 @@ export default {
); // fragment locator
let isValid;
if (this.profileLink.val === '') {
- console.log('profile link empty');
+
return true;
} else {
isValid = pattern.test(this.profileLink.val);
- console.log('lint is there', isValid);
+
}
return isValid;
- // if(!isValid){
- // console.log("triggered");
- // this.profileLinkError= true;
- // this.profileLinkErrMsg="The url entered is invalid. Please check it again!"
- // } else{
- // this.profileLinkError=false;
- // this.profileLinkErrMsg=""
- // }
- // clearTimeout(timer);
- // timer= setTimeout(()=>{
- // let isValid= pattern.test(this.profileLink.val);
- // if(!isValid){
- // console.log("triggered");
- // this.profileLinkError= true;
- // this.profileLinkErrMsg="The url entered is invalid. Please check it again!"
- // } else{
- // this.profileLinkError=false;
- // this.profileLinkErrMsg=""
- // }
-
- // }, 1000)
+
},
showDialog() {
this.toasterIsOpen = true;
@@ -782,37 +762,7 @@ export default {
vm.toasterIsOpen = true;
this.error = false;
this.errorMsg = '';
- // try {
- // await vm.axios.post(`${host}/api/auth/local/register`, {
- // full_name: vm.name.val,
- // password: vm.password.val,
- // email: vm.email.val,
- // username: vm.username.val,
- // motivation_text: vm.motivation.val,
- // current_role: vm.current_role.val,
- // scientific_discipline: vm.scientific_discipline.val,
- // current_affiliation: vm.affiliation.val,
- // profile_link: vm.profileLink.val,
- // });
-
- // this.isLoading = false;
- // vm.toasterIsOpen = true;
- // this.error = false;
- // this.errorMsg = "";
- // //vm.$router.push('login')
- // } catch (e) {
- // console.error(e);
- // this.isLoading = false;
- // if (e.message === "Request failed with status code 405") {
- // console.log(e.message);
- // }
- // if (e.message === "Request failed with status code 400") {
- // vm.error = true;
- // vm.errorMsg =
- // "Email Address already registered with an existing account. You can reset your password by clicking forget password from sign up page.";
- // }
-
- // }
+
},
},
};
diff --git a/web/src/views/UpdateItem.vue b/web/src/views/UpdateItem.vue
index bb4eadfd2ae867438d308aec021fb505bbfbcb05..9eb37cd12aad42b4b46bf356ad11929580270fe2 100644
--- a/web/src/views/UpdateItem.vue
+++ b/web/src/views/UpdateItem.vue
@@ -671,10 +671,7 @@ export default {
) {
return true;
}
- // else if (this.userRole === "Maintainer" && this.status !== "failed") {
- // console.log("in failed check");
- // return true;
- // }
+
return false;
},
@@ -721,7 +718,7 @@ export default {
return;
}
- // console.log(vm.userData)
+
let dat = {
Entity: this.entity,
EntityId: this.entityId,
@@ -764,12 +761,11 @@ export default {
);
}
- // console.log(res)
+
vm.$router.push('/profile');
} catch (error) {
- // console.log(error.response.data.error.message)
- // console.log(error.response)
+
this.error = true;
this.errorMsg = error;
}
@@ -787,7 +783,7 @@ export default {
return;
}
- // console.log(vm.userData)
+
vm.isLoading = true;
try {
const res = await this.axios.get(`${host}/api/update-items/` + id, {
@@ -796,7 +792,7 @@ export default {
},
});
- console.log(res.data.data);
+
if (res.data.data) {
const d = res.data.data.attributes;
@@ -821,7 +817,7 @@ export default {
vm.isLoading = false;
vm.loaded = true;
} catch (error) {
- // console.error(error)
+
this.error = true;
this.errorMsg = 'You are not authorized to access this item.';
vm.isLoading = false;
@@ -841,7 +837,7 @@ export default {
return;
}
if (!this.reviewerStatus || this.reviewerStatus === 'Choose an action') {
- console.log('in update review true');
+
this.error = true;
this.statusErrMsg = 'Please select an action.';
@@ -856,7 +852,7 @@ export default {
this.reviewerCmtErrMsg = 'Comment should not be empty!';
return;
}
- // console.log(vm.userData)
+
let dat = {
Status: this.reviewerStatus,
ReviewComments: this.reviewComments,
@@ -876,7 +872,7 @@ export default {
}
);
- // console.log(res)
+
this.reviewComments = '';
this.isLoading = false;
this.toasterIsOpen = true;
@@ -885,8 +881,7 @@ export default {
this.load(this.item);
}, 2000);
} catch (error) {
- // console.log(error.response.data.error.message)
- // console.log(error.response)
+
this.error = true;
this.errorMsg = error;
vm.isLoading = false;
diff --git a/web/src/views/UpdateUser.vue b/web/src/views/UpdateUser.vue
index e5468de3a94dac496eac23fd23d69436dccacc4d..3053587b84bfd17aa77bd684e2e056c1a3586c17 100644
--- a/web/src/views/UpdateUser.vue
+++ b/web/src/views/UpdateUser.vue
@@ -304,7 +304,7 @@ export default {
return
}
- // console.log(vm.role)
+
let dat = {
id: vm.user,
@@ -319,12 +319,11 @@ export default {
}
});
- // console.log(res.data)
+
vm.$router.push('/profile')
} catch(error) {
- // console.log(error.response.data.error.message)
- // console.log(error.response)
+
this.error = true
this.errorMsg = error
}
@@ -342,7 +341,7 @@ export default {
return
}
- // console.log(vm.userData)
+
try {
const res = await this.axios.get(`${host}/api/users-permissions/roles`, {
@@ -355,7 +354,7 @@ export default {
vm.roles = _.sortBy(_.filter(res.data.roles, o => o.name !== 'Public'), ['name']);
}
} catch(error) {
- // console.error(error)
+
this.error = true
this.errorMsg = 'You are not authorized to access this item.'
setTimeout(() => vm.$router.go(-1), 2000);
@@ -374,7 +373,7 @@ export default {
return
}
- // console.log(vm.userData)
+
try {
const res = await this.axios.get(`${host}/api/users/` + id, {
@@ -383,7 +382,7 @@ export default {
}
});
- // console.log(res)
+
if(res.data) {
const d = res.data;
@@ -406,7 +405,7 @@ export default {
vm.loaded = true;
} catch(error) {
- // console.error(error)
+
this.error = true
this.errorMsg = 'You are not authorized to access this item.'
setTimeout(() => vm.$router.go(-1), 2000);