From c42016442fc4c936d986eb5038b412fde0b47281 Mon Sep 17 00:00:00 2001
From: HongKee Moon <moon@mpi-cbg.de>
Date: Thu, 23 Jun 2022 16:41:06 +0200
Subject: [PATCH] lint:fixed
---
web/src/components/AboutPage.vue | 22 +-
web/src/components/AddNovelCondensate.vue | 414 +++++++++++-------
web/src/components/CMS/addDeletePubmed.vue | 341 ++++++++-------
web/src/components/CondensateDetailPage.vue | 335 +++++++-------
web/src/components/DDCODE/fetchCondensate.vue | 42 +-
.../Datatable/CondensateDataTable.vue | 137 +++---
web/src/components/LlpsTable.vue | 284 ++++++------
web/src/components/Team/TheTeamList.vue | 56 +--
web/src/views/Profile.vue | 7 +-
9 files changed, 891 insertions(+), 747 deletions(-)
diff --git a/web/src/components/AboutPage.vue b/web/src/components/AboutPage.vue
index d1e3f04..32a551a 100644
--- a/web/src/components/AboutPage.vue
+++ b/web/src/components/AboutPage.vue
@@ -223,11 +223,11 @@
</template>
<script>
-import StarRating from "vue-star-rating";
-const _ = require("lodash");
+import StarRating from 'vue-star-rating';
+const _ = require('lodash');
export default {
- name: "LandingPage",
+ name: 'LandingPage',
components: { StarRating },
props: {
msg: String,
@@ -235,19 +235,19 @@ export default {
data() {
return {
driversList: [
- "Undergo phase separation or self-assembly into liquid droplets independent of other proteins.",
- "Induce the formation of a condensate.",
- "Are essential for the integrity of a condensate.",
+ 'Undergo phase separation or self-assembly into liquid droplets independent of other proteins.',
+ 'Induce the formation of a condensate.',
+ 'Are essential for the integrity of a condensate.',
],
confidenceScoreTable: [
// { star: 0, description: "Reported in other LLPS database" },
- { star: 1, description: "PubMed reference annotated" },
- { star: 2, description: "High throuput experiment (eg. Mass spect.)" },
- { star: 3, description: "In vitro" },
+ { star: 1, description: 'PubMed reference annotated' },
+ { star: 2, description: 'High throuput experiment (eg. Mass spect.)' },
+ { star: 3, description: 'In vitro' },
- { star: 4, description: "In cellulo" },
- { star: 5, description: "In vivo" },
+ { star: 4, description: 'In cellulo' },
+ { star: 5, description: 'In vivo' },
],
};
},
diff --git a/web/src/components/AddNovelCondensate.vue b/web/src/components/AddNovelCondensate.vue
index 3e2010e..b8705ea 100644
--- a/web/src/components/AddNovelCondensate.vue
+++ b/web/src/components/AddNovelCondensate.vue
@@ -1,7 +1,10 @@
<template>
<div class="flex flex-wrap bg-white">
<div class="w-5/6">
- <form autocomplete="off" @submit.prevent="addCondensate()">
+ <form
+ autocomplete="off"
+ @submit.prevent="addCondensate()"
+ >
<div v-if="isLoading">
<base-spinner />
</div>
@@ -16,9 +19,10 @@
gap-y-4
"
>
- <label class="text-right" for="condensate_is_experimental"
- >Synthetic/Biomolecular</label
- >
+ <label
+ class="text-right"
+ for="condensate_is_experimental"
+ >Synthetic/Biomolecular</label>
<div class="col-span-2">
<input
id="condensate_is_experimental_true"
@@ -26,25 +30,28 @@
type="radio"
name="condensate_is_experimental"
value="true"
- />
- <label for="condensate_is_experimental_true" class="ml-2 mr-3"
- >Synthetic</label
>
+ <label
+ for="condensate_is_experimental_true"
+ class="ml-2 mr-3"
+ >Synthetic</label>
<input
id="condensate_is_experimental_false"
v-model="condensate.is_experimental"
type="radio"
name="condensate_is_experimental"
value="false"
- />
- <label for="condensate_is_experimental_false" class="ml-2 mr-3"
- >Biomolecular</label
>
+ <label
+ for="condensate_is_experimental_false"
+ class="ml-2 mr-3"
+ >Biomolecular</label>
</div>
- <label class="text-right" for="condensate_name"
- >Condensate Name</label
- >
+ <label
+ class="text-right"
+ for="condensate_name"
+ >Condensate Name</label>
<div class="col-span-2">
<input
id="condensate_name"
@@ -63,7 +70,7 @@
"
type="text"
placeholder="Name"
- />
+ >
<p
v-if="condensate.errors.name"
@@ -73,19 +80,28 @@
</p>
</div>
- <label class="text-right" for="condensate_protein">Proteins</label>
+ <label
+ class="text-right"
+ for="condensate_protein"
+ >Proteins</label>
<div class="col-span-2">
<tags-input
v-model="proteinNameList"
class="w-1/3 w-full"
@proteinNotFound="notFound"
/>
- <p v-if="searchProtein.errors" class="text-red-500 font-bold">
+ <p
+ v-if="searchProtein.errors"
+ class="text-red-500 font-bold"
+ >
{{ searchProtein.message }}
</p>
</div>
- <label class="text-right" for="protein_table" />
+ <label
+ class="text-right"
+ for="protein_table"
+ />
<div class="col-span-2 relative sm:rounded-lg">
<table
class="w-full text-sm text-left text-gray-500 dark:text-gray-400"
@@ -99,12 +115,40 @@
"
>
<tr>
- <th scope="col" class="px-6 py-3">Uniprot</th>
- <th scope="col" class="px-6 py-3">Functional type</th>
- <th scope="col" class="px-6 py-3">Pubmed</th>
- <th scope="col" class="px-6 py-3">Driver criterion</th>
- <th scope="col" class="px-6 py-3">Experimental evidences</th>
- <th scope="col" class="px-6 py-3">
+ <th
+ scope="col"
+ class="px-6 py-3"
+ >
+ Uniprot
+ </th>
+ <th
+ scope="col"
+ class="px-6 py-3"
+ >
+ Functional type
+ </th>
+ <th
+ scope="col"
+ class="px-6 py-3"
+ >
+ Pubmed
+ </th>
+ <th
+ scope="col"
+ class="px-6 py-3"
+ >
+ Driver criterion
+ </th>
+ <th
+ scope="col"
+ class="px-6 py-3"
+ >
+ Experimental evidences
+ </th>
+ <th
+ scope="col"
+ class="px-6 py-3"
+ >
<span class="sr-only">Edit</span>
</th>
</tr>
@@ -154,15 +198,17 @@
hover:underline
"
@click="editProtein(item)"
- >Edit</a
- >
+ >Edit</a>
</td>
</tr>
</tbody>
</table>
</div>
- <div v-if="showAddNewProtein" id="deleteModal">
+ <div
+ v-if="showAddNewProtein"
+ id="deleteModal"
+ >
<div class="fixed z-40 h-full inset-0 opacity-25 bg-black" />
<div
class="
@@ -261,8 +307,7 @@
newProtein.uniprot_id === ""
? "new protein"
: newProtein.uniprot_id
- }}</b
- >.
+ }}</b>.
</h2>
<form
@@ -271,15 +316,17 @@
@submit.prevent="addUniprot"
>
<div class="form-group">
- <label class="control-label col-sm-3" for="uniprot_id"
- >Uniprot ID *
+ <label
+ class="control-label col-sm-3"
+ for="uniprot_id"
+ >Uniprot ID *
<a
class="uniprot-link tooltipped tooltipped-e"
- aria-label='The UniProt ID (accession) is the 6 to the 10-character-long name displayed on the heading of the protein page from Uniprot.
+ aria-label="The UniProt ID (accession) is the 6 to the 10-character-long name displayed on the heading of the protein page from Uniprot.
It is a unique identifier for a protein from the whole Uniprot database (https://www.uniprot.org/help/accession_numbers).
Please note that different proteins from the same gene will also have different Uniprot IDs.
- For example, The Uniprot ID of "FUS Human" is P35637 (https://www.uniprot.org/uniprot/P35637).
- It is usually the last part of the URI of the HTTPS link of the protein page.'
+ For example, The Uniprot ID of "FUS Human" is P35637 (https://www.uniprot.org/uniprot/P35637).
+ It is usually the last part of the URI of the HTTPS link of the protein page."
>
<span class="fa fa-info-circle" />
</a>
@@ -302,7 +349,7 @@
"
type="text"
placeholder="Uniprot ID"
- />
+ >
<p
v-if="newProtein.errors.uniprot_id"
@@ -316,8 +363,7 @@
<label
class="control-label col-sm-3"
for="functional_type"
- >Functional Type</label
- >
+ >Functional Type</label>
<div class="col-sm-8">
<select
id="functional_type"
@@ -336,10 +382,18 @@
hover:border-blue-700
"
>
- <option value="">Select Functional Type</option>
- <option value="client">client</option>
- <option value="driver">driver</option>
- <option value="regulator">regulator</option>
+ <option value="">
+ Select Functional Type
+ </option>
+ <option value="client">
+ client
+ </option>
+ <option value="driver">
+ driver
+ </option>
+ <option value="regulator">
+ regulator
+ </option>
</select>
<p
@@ -351,9 +405,10 @@
</div>
</div>
<div class="form-group">
- <label class="control-label col-sm-3" for="pubmed_ids"
- >PubMed IDs *</label
- >
+ <label
+ class="control-label col-sm-3"
+ for="pubmed_ids"
+ >PubMed IDs *</label>
<div class="col-sm-8">
<input
id="pubmed_ids"
@@ -371,7 +426,7 @@
"
type="text"
placeholder="PubMed IDs (separated by comma)"
- />
+ >
<p
v-if="newProtein.errors.pubmed_ids"
@@ -385,35 +440,39 @@
<label
class="control-label col-sm-3"
for="driver_criterion"
- >Driver Criterion</label
- >
+ >Driver Criterion</label>
<div class="col-sm-8">
<input
id="self_ps"
v-model="newProtein.driver_criterion"
type="checkbox"
value="self_ps"
- />
- <label for="self_ps" class="px-2">Self-PS</label>
+ >
+ <label
+ for="self_ps"
+ class="px-2"
+ >Self-PS</label>
<input
id="induces_assembly"
v-model="newProtein.driver_criterion"
type="checkbox"
value="induces_assembly"
- />
- <label for="induces_assembly" class="px-2"
- >Induces Assembly</label
>
- <br />
+ <label
+ for="induces_assembly"
+ class="px-2"
+ >Induces Assembly</label>
+ <br>
<input
id="essential_for_integrity"
v-model="newProtein.driver_criterion"
type="checkbox"
value="essential_for_integrity"
- />
- <label for="essential_for_integrity" class="px-2"
- >Essential For Integrity</label
>
+ <label
+ for="essential_for_integrity"
+ class="px-2"
+ >Essential For Integrity</label>
</div>
<p
v-if="newProtein.errors.driver_criterion"
@@ -426,67 +485,81 @@
<label
class="control-label col-sm-3"
for="experimental_evidences"
- >Experimental Evidences</label
- >
+ >Experimental Evidences</label>
<div class="col-sm-6">
<input
id="in_vitro"
v-model="newProtein.experimental_evidences"
type="checkbox"
value="in_vitro"
- />
- <label for="in_vitro" class="px-2">In Vitro</label>
+ >
+ <label
+ for="in_vitro"
+ class="px-2"
+ >In Vitro</label>
<input
id="in_vivo"
v-model="newProtein.experimental_evidences"
type="checkbox"
value="in_vivo"
- />
- <label for="in_vivo" class="px-2">In Vivo</label>
- <br />
+ >
+ <label
+ for="in_vivo"
+ class="px-2"
+ >In Vivo</label>
+ <br>
<input
id="in_cellulo"
v-model="newProtein.experimental_evidences"
type="checkbox"
value="in_cellulo"
- />
- <label for="in_cellulo" class="px-2"
- >In Cellulo</label
>
- <br />
+ <label
+ for="in_cellulo"
+ class="px-2"
+ >In Cellulo</label>
+ <br>
<input
id="mass_spectrometry"
v-model="newProtein.experimental_evidences"
type="checkbox"
value="mass_spectrometry"
- />
- <label for="mass_spectrometry" class="px-2"
- >Mass Spectrometry</label
>
- <br />
+ <label
+ for="mass_spectrometry"
+ class="px-2"
+ >Mass Spectrometry</label>
+ <br>
<input
id="colocalization"
v-model="newProtein.experimental_evidences"
type="checkbox"
value="colocalization"
- />
- <label for="colocalization" class="px-2"
- >Colocalization</label
>
+ <label
+ for="colocalization"
+ class="px-2"
+ >Colocalization</label>
<input
id="frap"
v-model="newProtein.experimental_evidences"
type="checkbox"
value="frap"
- />
- <label for="frap" class="px-2">FRAP</label>
+ >
+ <label
+ for="frap"
+ class="px-2"
+ >FRAP</label>
<input
id="others"
v-model="newProtein.experimental_evidences"
type="checkbox"
value="others"
- />
- <label for="others" class="px-2">Others</label>
+ >
+ <label
+ for="others"
+ class="px-2"
+ >Others</label>
</div>
<p
v-if="newProtein.errors.experimental_evidences"
@@ -544,7 +617,10 @@
</div>
</div>
- <label class="text-right" for="condensate_synonyms">Synonyms</label>
+ <label
+ class="text-right"
+ for="condensate_synonyms"
+ >Synonyms</label>
<div class="col-span-2">
<input
id="condensate_synonyms"
@@ -563,7 +639,7 @@
"
type="text"
placeholder="Synonyms (comma-separated)"
- />
+ >
<p
v-if="condensate.errors.synonyms"
@@ -573,9 +649,10 @@
</p>
</div>
- <label class="text-right" for="condensate_description"
- >Description</label
- >
+ <label
+ class="text-right"
+ for="condensate_description"
+ >Description</label>
<div class="col-span-2">
<input
id="condensate_description"
@@ -594,11 +671,13 @@
"
type="text"
placeholder="Description"
- />
+ >
</div>
- <label class="text-right" for="condensate_comments"
- >Comments <span v-show="getUserData !== 'Maintainer'">*</span>
+ <label
+ class="text-right"
+ for="condensate_comments"
+ >Comments <span v-show="getUserData !== 'Maintainer'">*</span>
</label>
<div class="col-span-2">
<textarea
@@ -666,7 +745,10 @@
</div>
<div>
- <h3 v-if="fetchError" class="text-red-500">
+ <h3
+ v-if="fetchError"
+ class="text-red-500"
+ >
{{ fetchError }}
</h3>
</div>
@@ -678,13 +760,13 @@
<script>
// require modules
/* eslint-disable no-unused-vars */
-import TagsInput from "@/components/TagsInput.vue";
-import BaseSpinner from "./UI/BaseSpinner.vue";
-import { apikey } from "@/components/js/const";
-const _ = require("lodash");
+import TagsInput from '@/components/TagsInput.vue';
+import BaseSpinner from './UI/BaseSpinner.vue';
+import { apikey } from '@/components/js/const';
+const _ = require('lodash');
export default {
- name: "AddNovelCondensate",
+ name: 'AddNovelCondensate',
components: {
TagsInput,
BaseSpinner,
@@ -695,12 +777,12 @@ export default {
showAddNewProtein: false,
searchProtein: {
errors: false,
- message: "",
+ message: '',
},
newProtein: {
- uniprot_id: "",
- functional_type: "",
- pubmed_ids: "",
+ uniprot_id: '',
+ functional_type: '',
+ pubmed_ids: '',
driver_criterion: [],
experimental_evidences: [],
errors: {
@@ -710,35 +792,35 @@ export default {
driver_criterion: false,
experimental_evidences: false,
},
- errorMsg: "",
+ errorMsg: '',
},
condensate: {
- name: "",
+ name: '',
is_experimental: false,
proteins: [],
- synonyms: "",
- comments: "",
- description: "",
+ synonyms: '',
+ comments: '',
+ description: '',
errors: {
name: false,
species: false,
synonyms: false,
comments: false,
},
- errorMsg: "",
+ errorMsg: '',
},
isLoading: false,
- proteinList: this.$store.getters["Param/proteinList"],
- fetchError: "",
- isDev: process.env.NODE_ENV === "development",
+ proteinList: this.$store.getters['Param/proteinList'],
+ fetchError: '',
+ isDev: process.env.NODE_ENV === 'development',
};
},
computed: {
jwt: function () {
- return this.$store.getters["User/jwt"];
+ return this.$store.getters['User/jwt'];
},
getUserData() {
- const userRole = this.$store.getters["User/userRole"];
+ const userRole = this.$store.getters['User/userRole'];
// console.log('role is', userRole);
return userRole;
},
@@ -752,7 +834,7 @@ export default {
const idx = this.proteinList.findIndex(
(d) => d.uniprot_id === obj.tag.text
);
- this.$store.dispatch("Param/removeProtein", idx);
+ this.$store.dispatch('Param/removeProtein', idx);
obj.deleteTag();
// console.log(this.$store.getters['Param/proteinList'])
},
@@ -761,7 +843,7 @@ export default {
mounted: function () {
const vm = this;
// vm.proteinNameList.push(vm.protein);
- vm.$store.dispatch("Param/resetProteins");
+ vm.$store.dispatch('Param/resetProteins');
},
methods: {
editProtein(protein) {
@@ -773,7 +855,7 @@ export default {
this.newProtein.driver_criterion.length
);
protein.driver_criterion
- .split(",")
+ .split(',')
.forEach((c) => this.newProtein.driver_criterion.push(c));
this.newProtein.experimental_evidences.splice(
@@ -781,32 +863,32 @@ export default {
this.newProtein.experimental_evidences.length
);
protein.experimental_evidences
- .split(",")
+ .split(',')
.forEach((c) => this.newProtein.experimental_evidences.push(c));
- this.newProtein.errorMsg = "";
+ this.newProtein.errorMsg = '';
this.showAddNewProtein = true;
},
notFound(val, isEmpty) {
if (!val && !isEmpty) {
this.searchProtein.errors = true;
this.searchProtein.message =
- "Protein not found. Try adding new protein.";
+ 'Protein not found. Try adding new protein.';
} else {
this.searchProtein.errors = false;
- this.searchProtein.message = "";
+ this.searchProtein.message = '';
}
},
close() {
- this.condensate.name = "";
+ this.condensate.name = '';
this.condensate.is_experimental = false;
- this.condensate.species = "";
+ this.condensate.species = '';
this.condensate.proteins = [];
- this.condensate.synonyms = "";
- this.condensate.comments = "";
- this.condensate.description = "";
- this.condensate.errorMsg = "";
- this.$router.push("/");
+ this.condensate.synonyms = '';
+ this.condensate.comments = '';
+ this.condensate.description = '';
+ this.condensate.errorMsg = '';
+ this.$router.push('/');
},
async addUniprot() {
const vm = this;
@@ -814,7 +896,7 @@ export default {
Object.keys(vm.newProtein.errors).forEach(
(v) => (vm.newProtein.errors[v] = false)
);
- console.log("uniprot is", this.newProtein.uniprot_id);
+ console.log('uniprot is', this.newProtein.uniprot_id);
const validUniprot = await this.uniprotIdValidation(
this.newProtein.uniprot_id
);
@@ -825,8 +907,8 @@ export default {
return;
}
- if (vm.newProtein.pubmed_ids === "") {
- vm.newProtein.errorMsg = "Pubmed IDs should not be empty!";
+ if (vm.newProtein.pubmed_ids === '') {
+ vm.newProtein.errorMsg = 'Pubmed IDs should not be empty!';
vm.newProtein.errors.pubmed_ids = true;
return;
}
@@ -834,14 +916,14 @@ export default {
const idx = vm.proteinList.findIndex(
(d) => d.uniprot_id === vm.newProtein.uniprot_id
);
- vm.$store.dispatch("Param/removeProtein", idx);
+ vm.$store.dispatch('Param/removeProtein', idx);
- vm.$store.dispatch("Param/addProtein", {
+ vm.$store.dispatch('Param/addProtein', {
uniprot_id: vm.newProtein.uniprot_id,
functional_type: vm.newProtein.functional_type,
pubmed_ids: vm.newProtein.pubmed_ids,
- driver_criterion: vm.newProtein.driver_criterion.join(","),
- experimental_evidences: vm.newProtein.experimental_evidences.join(","),
+ driver_criterion: vm.newProtein.driver_criterion.join(','),
+ experimental_evidences: vm.newProtein.experimental_evidences.join(','),
});
vm.newProtein.driver_criterion.splice(
@@ -852,8 +934,8 @@ export default {
0,
vm.newProtein.experimental_evidences.length
);
- vm.newProtein.pubmed_ids = "";
- vm.newProtein.functional_type = "";
+ vm.newProtein.pubmed_ids = '';
+ vm.newProtein.functional_type = '';
vm.showAddNewProtein = false;
},
@@ -871,15 +953,15 @@ export default {
0,
vm.newProtein.experimental_evidences.length
);
- vm.newProtein.pubmed_ids = "";
- vm.newProtein.functional_type = "";
+ vm.newProtein.pubmed_ids = '';
+ vm.newProtein.functional_type = '';
vm.showAddNewProtein = false;
},
async uniprotIdValidation(id) {
try {
const res = await fetch(`https://www.uniprot.org/uniprot/${id}`, {
- method: "HEAD",
+ method: 'HEAD',
});
const response = await res;
if (!response.ok && response.status === 404) {
@@ -896,15 +978,15 @@ export default {
>mail@cd-code.org</a> for further assist. `,
};
} else {
- return { valid: true, msg: "Valid Uniprot ID." };
+ return { valid: true, msg: 'Valid Uniprot ID.' };
}
} catch (err) {
- console.log("error", err);
+ console.log('error', err);
return {
valid: false,
msg:
err.message +
- "." +
+ '.' +
`Please contact CD-CODE admin <a
href="mailto:mail@cd-code.org"
class="text-blue-500 hover:text-blue-700"
@@ -917,41 +999,41 @@ export default {
const vm = this;
let host = vm.isDev
- ? require("./js/const").devHost
- : require("./js/const").host;
+ ? require('./js/const').devHost
+ : require('./js/const').host;
Object.keys(vm.newProtein.errors).forEach(
(v) => (vm.newProtein.errors[v] = false)
);
- if (vm.newProtein.uniprot_id === "") {
- vm.newProtein.errorMsg = "Uniprot ID should not be empty!";
+ if (vm.newProtein.uniprot_id === '') {
+ vm.newProtein.errorMsg = 'Uniprot ID should not be empty!';
vm.newProtein.errors.uniprot_id = true;
return;
} else if (vm.newProtein.uniprot_id.length < 6) {
- vm.newProtein.errorMsg = "Uniprot ID should be minimum of 6 character.";
+ vm.newProtein.errorMsg = 'Uniprot ID should be minimum of 6 character.';
vm.newProtein.errors.uniprot_id = true;
return;
} else if (vm.newProtein.uniprot_id.length > 10) {
vm.newProtein.errorMsg =
- "Uniprot ID should be maximum of 10 character.";
+ 'Uniprot ID should be maximum of 10 character.';
vm.newProtein.errors.uniprot_id = true;
return;
} else if (/(\s)/.test(vm.newProtein.uniprot_id)) {
- vm.newProtein.errorMsg = "Uniprot ID should not have space in between.";
+ vm.newProtein.errorMsg = 'Uniprot ID should not have space in between.';
vm.newProtein.errors.uniprot_id = true;
return;
} else {
let host = vm.isDev
- ? require("./js/const").devHost
- : require("./js/const").host;
+ ? require('./js/const').devHost
+ : require('./js/const').host;
let url = `${host}/proteins?fields=uniprot_id,gene_name,name&query=${vm.newProtein.uniprot_id}`;
const ret = await fetch(url, {
- method: "GET",
- mode: "cors",
- cache: "no-cache",
+ method: 'GET',
+ mode: 'cors',
+ cache: 'no-cache',
headers: {
Authorization: `Bearer ${apikey}`,
},
@@ -959,14 +1041,14 @@ export default {
if (ret.count !== 0) {
vm.newProtein.errorMsg =
- "Uniprot ID already exists in the database. Add the tag!";
+ 'Uniprot ID already exists in the database. Add the tag!';
vm.newProtein.errors.uniprot_id = true;
return;
}
}
- if (vm.newProtein.pubmed_ids === "") {
- vm.newProtein.errorMsg = "Pubmed IDs should not be empty!";
+ if (vm.newProtein.pubmed_ids === '') {
+ vm.newProtein.errorMsg = 'Pubmed IDs should not be empty!';
vm.newProtein.errors.pubmed_ids = true;
return;
}
@@ -983,7 +1065,7 @@ export default {
// return;
// }
- vm.$store.dispatch("Param/addProtein", {
+ vm.$store.dispatch('Param/addProtein', {
uniprot_id: vm.newProtein.uniprot_id,
functional_type: vm.newProtein.functional_type,
proteins: vm.newProtein.proteins,
@@ -995,7 +1077,7 @@ export default {
vm.newProtein.uniprot_id =
vm.newProtein.functional_type =
vm.newProtein.pubmed_ids =
- "";
+ '';
vm.newProtein.driver_criterion = [];
vm.newProtein.experimental_evidences = [];
vm.showAddNewProtein = false;
@@ -1007,32 +1089,32 @@ export default {
(v) => (vm.condensate.errors[v] = false)
);
- if (vm.condensate.name === "") {
- vm.condensate.errorMsg = "Condensate name should not be empty!";
+ if (vm.condensate.name === '') {
+ vm.condensate.errorMsg = 'Condensate name should not be empty!';
vm.condensate.errors.name = true;
return;
} else if (vm.proteinList.length === 0) {
vm.searchProtein.errors = true;
- vm.searchProtein.message = "Proteins field should not be empty.";
+ vm.searchProtein.message = 'Proteins field should not be empty.';
return;
}
let host = vm.isDev
- ? require("./js/const").devApiHost
- : require("./js/const").apiHost;
+ ? require('./js/const').devApiHost
+ : require('./js/const').apiHost;
let url = `${host}/api/novel-condensates`;
let data;
- if (this.getUserData === "Maintainer") {
+ if (this.getUserData === 'Maintainer') {
data = {
Name: vm.condensate.name,
IsExperimental: vm.condensate.is_experimental,
Proteins: vm.proteinList,
Synonyms: vm.condensate.synonyms,
Description: vm.condensate.description,
- Status: "accepted",
+ Status: 'accepted',
SubmissionComments:
- "Maintainer do not need to provide a reason for such change at the moment!",
+ 'Maintainer do not need to provide a reason for such change at the moment!',
};
} else {
data = {
@@ -1041,7 +1123,7 @@ export default {
Proteins: vm.proteinList,
Synonyms: vm.condensate.synonyms,
Description: vm.condensate.description,
- Status: "requested",
+ Status: 'requested',
SubmissionComments: vm.condensate.comments,
};
}
@@ -1065,18 +1147,18 @@ export default {
vm.condensate.synonyms =
vm.condensate.comments =
vm.condensate.description =
- "";
- vm.$store.dispatch("Param/resetProteins");
- vm.$emit("showToaster", "Condensate added successfully!");
+ '';
+ vm.$store.dispatch('Param/resetProteins');
+ vm.$emit('showToaster', 'Condensate added successfully!');
setTimeout(() => {
- vm.$emit("hideToaster");
+ vm.$emit('hideToaster');
}, 2000);
} catch (e) {
console.error(e);
vm.isLoading = false;
vm.fetchError =
- e.message || "Something went wrong, please try again later!";
+ e.message || 'Something went wrong, please try again later!';
vm.isSubmitted = true;
vm.error = true;
}
diff --git a/web/src/components/CMS/addDeletePubmed.vue b/web/src/components/CMS/addDeletePubmed.vue
index 4bfbb54..ad48135 100644
--- a/web/src/components/CMS/addDeletePubmed.vue
+++ b/web/src/components/CMS/addDeletePubmed.vue
@@ -1,6 +1,9 @@
<template>
<div>
- <base-toaster :open="toasterIsOpen" @close="hideDialog">
+ <base-toaster
+ :open="toasterIsOpen"
+ @close="hideDialog"
+ >
<div class="flex justify-between items-center">
<font-awesome-icon
class="ml-3"
@@ -9,8 +12,14 @@
/>
<h4>Request submitted successfully!</h4>
- <button class="btn btn-outline" @click="hideDialog">
- <font-awesome-icon icon="fa-regular fa-circle-xmark" size="2x" />
+ <button
+ class="btn btn-outline"
+ @click="hideDialog"
+ >
+ <font-awesome-icon
+ icon="fa-regular fa-circle-xmark"
+ size="2x"
+ />
</button>
</div>
</base-toaster>
@@ -37,8 +46,7 @@
"
for="pubId"
>
- Enter Pubmed ID to add.</label
- >
+ Enter Pubmed ID to add.</label>
<input
id="pubId"
@@ -47,18 +55,17 @@
type="text"
placeholder="Pubmed ID"
@keyup="validation"
- />
+ >
<p
v-if="!isValid && error"
- v-html="error"
class="text-red-600 mt-4 font-bold"
- ></p>
+ v-html="error"
+ />
<label
class="text-left font-bold mb-2 text-xl sm:text-2xl"
for="funComment"
- >Reason</label
- >
+ >Reason</label>
<div>
<textarea
@@ -163,8 +170,7 @@
sm:text-2xl
font-montserrat
"
- >Select Pubmed ID to remove.</label
- >
+ >Select Pubmed ID to remove.</label>
<div>
<div
v-for="(item, index) in getPubmed"
@@ -177,7 +183,7 @@
type="radio"
:value="item"
@click="selectPubmedId"
- />
+ >
<div class="flex items-center">
<label :for="index">
{{ item }}
@@ -196,8 +202,7 @@
font-montserrat
"
for="funComment"
- >Reason</label
- >
+ >Reason</label>
<div>
<textarea
@@ -226,7 +231,10 @@
placeholder="Please provide evidence/PubMed ID."
@keyup="validateComment"
/>
- <p v-if="!isValid && error" class="text-red-600 mt-4 font-bold">
+ <p
+ v-if="!isValid && error"
+ class="text-red-600 mt-4 font-bold"
+ >
{{ error }}
</p>
<p
@@ -295,10 +303,14 @@
</div>
</div>
</div>
- <div v-if="mode === 'protein'" class="form-group">
- <label class="control-label col-sm-4" for="actionType"
- >Select Action</label
- >
+ <div
+ v-if="mode === 'protein'"
+ class="form-group"
+ >
+ <label
+ class="control-label col-sm-4"
+ for="actionType"
+ >Select Action</label>
<div class="col-sm-8">
<div>
<select
@@ -307,7 +319,11 @@
class="form-control"
@change="selectValue"
>
- <option v-for="item in actionOptions" :key="item" class="">
+ <option
+ v-for="item in actionOptions"
+ :key="item"
+ class=""
+ >
{{ item }}
</option>
</select>
@@ -317,9 +333,10 @@
<div v-if="showAddPubmedId">
<div class="form-group">
- <label class="control-label col-sm-4" for="pubId"
- >Enter pubmed ID</label
- >
+ <label
+ class="control-label col-sm-4"
+ for="pubId"
+ >Enter pubmed ID</label>
<div class="col-sm-8">
<input
id="pubId"
@@ -328,18 +345,19 @@
type="text"
placeholder="Pubmed ID"
@keyup="validation"
- />
+ >
<p
v-if="!isValid && error"
- v-html="error"
class="text-red-600 mt-4 font-bold"
- ></p>
+ v-html="error"
+ />
</div>
</div>
<div class="form-group">
- <label class="control-label col-sm-4" for="funComment"
- >Reason</label
- >
+ <label
+ class="control-label col-sm-4"
+ for="funComment"
+ >Reason</label>
<div class="col-sm-8">
<textarea
@@ -394,8 +412,11 @@
type="radio"
:value="item"
@click="selectPubmedId"
- />
- <label class="control-label" :for="index">
+ >
+ <label
+ class="control-label"
+ :for="index"
+ >
{{ item }}
</label>
</div>
@@ -404,9 +425,10 @@
</div>
</div>
<div class="form-group -mt-9">
- <label class="control-label col-sm-4" for="funComment"
- >Reason</label
- >
+ <label
+ class="control-label col-sm-4"
+ for="funComment"
+ >Reason</label>
<div class="col-sm-8">
<textarea
@@ -435,7 +457,10 @@
placeholder="Please provide evidence/PubMed ID."
@keyup="validateComment"
/>
- <p v-if="!isValid && error" class="text-red-600 mt-4 font-bold">
+ <p
+ v-if="!isValid && error"
+ class="text-red-600 mt-4 font-bold"
+ >
{{ error }}
</p>
<p
@@ -517,50 +542,50 @@
</template>
<script>
-import BaseSpinner from "../UI/BaseSpinner.vue";
-import BaseToaster from "../UI/BaseToaster.vue";
+import BaseSpinner from '../UI/BaseSpinner.vue';
+import BaseToaster from '../UI/BaseToaster.vue';
//import BaseToaster from '../UI/BaseToaster.vue'
-const _ = require("lodash");
-let host = require("../js/const").apiHost;
+const _ = require('lodash');
+let host = require('../js/const').apiHost;
export default {
components: { BaseSpinner, BaseToaster },
- props: ["data", "mode", "pubmed", "uniprot", "type", "canonicalId"],
+ props: ['data', 'mode', 'pubmed', 'uniprot', 'type', 'canonicalId'],
data() {
return {
- actionType: "",
- pubmedId: "",
- buttonText: "",
+ actionType: '',
+ pubmedId: '',
+ buttonText: '',
showButtons: false,
- actionOptions: ["Add", "Delete"],
+ actionOptions: ['Add', 'Delete'],
showAddPubmedId: false,
showDeletePubmedId: false,
isValid: false,
inputVal: true,
- error: "",
- commentError: "",
- comment: "",
- message: "",
- pubmedIds: "",
+ error: '',
+ commentError: '',
+ comment: '',
+ message: '',
+ pubmedIds: '',
serverError: false,
whitespaceRegex: /(\s)/,
- isDev: process.env.NODE_ENV === "development",
+ isDev: process.env.NODE_ENV === 'development',
isLoading: false,
toasterIsOpen: false,
};
},
computed: {
btnDisabled() {
- if (!this.pubmedId || (!this.comment && this.role !== "Maintainer")) {
+ if (!this.pubmedId || (!this.comment && this.role !== 'Maintainer')) {
return true;
}
return false;
},
jwt: function () {
- return this.$store.getters["User/jwt"];
+ return this.$store.getters['User/jwt'];
},
role: function () {
- return this.$store.getters["User/userRole"];
+ return this.$store.getters['User/userRole'];
},
getPubmed() {
let pubIds;
@@ -573,7 +598,7 @@ export default {
return pubIds;
},
disableButton() {
- if (!this.pubmedId || (!this.comment && this.role !== "Maintainer")) {
+ if (!this.pubmedId || (!this.comment && this.role !== 'Maintainer')) {
return true;
}
return false;
@@ -596,8 +621,8 @@ export default {
},
validateComment() {
this.isValid = true;
- this.error = "";
- this.message = "";
+ this.error = '';
+ this.message = '';
this.serverError = false;
},
@@ -605,14 +630,14 @@ export default {
let foundPubId;
if (
- this.mode === "condensate" &&
- this.type === "Add" &&
+ this.mode === 'condensate' &&
+ this.type === 'Add' &&
Object.keys(data).length > 0
) {
let pubmedData;
for (let key in data) {
if (key === this.uniprot) {
- console.log("working in add", data[key]);
+ console.log('working in add', data[key]);
pubmedData = data[key];
}
}
@@ -624,15 +649,15 @@ export default {
}
}
} else if (
- this.mode === "protein" &&
- this.actionType === "Add" &&
+ this.mode === 'protein' &&
+ this.actionType === 'Add' &&
Object.keys(data).length > 0
) {
foundPubId = data.pubmed_ids.find((p) => p === this.pubmedId);
}
- this.message = "";
- if (this.pubmedId === "") {
- this.error = "Pubmed Id should not be empty!";
+ this.message = '';
+ if (this.pubmedId === '') {
+ this.error = 'Pubmed Id should not be empty!';
return false;
}
@@ -644,13 +669,13 @@ export default {
// }
else if (foundPubId) {
this.isValid = false;
- this.commentError = "";
+ this.commentError = '';
this.error =
- "Given pubmed id is already present. Please add another pubmed id.";
+ 'Given pubmed id is already present. Please add another pubmed id.';
return false;
}
- this.message = "";
+ this.message = '';
return true;
},
@@ -659,16 +684,16 @@ export default {
const vm = this;
if (vm.isDev) {
- host = require("../js/const").devApiHost;
+ host = require('../js/const').devApiHost;
}
let url = `${host}/api/update-items`;
let data;
- if (this.mode === "condensate" && this.type === "Add") {
+ if (this.mode === 'condensate' && this.type === 'Add') {
//const foundPubId = this.pubmed.find((p) => p === this.pubmedId);
- console.log("return val", this.inputValidation(this.pubmed));
+ console.log('return val', this.inputValidation(this.pubmed));
let valid = this.inputValidation(this.pubmed);
@@ -677,160 +702,160 @@ export default {
}
let entityId = `${this.canonicalId}==${this.uniprot}`;
- if (this.role === "Maintainer") {
+ if (this.role === 'Maintainer') {
data = {
- Entity: "condensate_protein",
+ Entity: 'condensate_protein',
EntityId: entityId,
- ChangeOperation: "add",
- Attribute: "pubmed_ids",
+ ChangeOperation: 'add',
+ Attribute: 'pubmed_ids',
Value: this.pubmedId,
SubmissionComments: this.comment
? this.comment
- : "Maintainer do not need to provide a reason for such change at the moment!",
- Status: "accepted",
+ : 'Maintainer do not need to provide a reason for such change at the moment!',
+ Status: 'accepted',
};
} else {
- if (this.comment === "" || this.comment.length < 50) {
+ if (this.comment === '' || this.comment.length < 50) {
this.isValid = false;
this.commentError =
- "Reason should not be empty or less than 50 character!";
+ 'Reason should not be empty or less than 50 character!';
return false;
}
data = {
- Entity: "condensate_protein",
+ Entity: 'condensate_protein',
EntityId: entityId,
- ChangeOperation: "add",
- Attribute: "pubmed_ids",
+ ChangeOperation: 'add',
+ Attribute: 'pubmed_ids',
Value: this.pubmedId,
SubmissionComments: this.comment,
- Status: "requested",
+ Status: 'requested',
};
}
- } else if (this.mode === "condensate" && this.type === "Delete") {
+ } else if (this.mode === 'condensate' && this.type === 'Delete') {
//val
if (!this.inputValidation(this.pubmed)) {
return;
}
- this.message = "";
- if (this.pubmedId === "") {
+ this.message = '';
+ if (this.pubmedId === '') {
this.isValid = false;
- this.error = "Please select a pubmed id to remove!";
+ this.error = 'Please select a pubmed id to remove!';
return;
}
let entityId = `${this.canonicalId}==${this.uniprot}`;
- if (this.role === "Maintainer") {
+ if (this.role === 'Maintainer') {
data = {
- Entity: "condensate_protein",
+ Entity: 'condensate_protein',
EntityId: entityId,
- ChangeOperation: "remove",
- Attribute: "pubmed_ids",
+ ChangeOperation: 'remove',
+ Attribute: 'pubmed_ids',
Value: this.pubmedId,
SubmissionComments: this.comment
? this.comment
- : "Maintainer do not need to provide a reason for such change at the moment!",
- Status: "accepted",
+ : 'Maintainer do not need to provide a reason for such change at the moment!',
+ Status: 'accepted',
};
} else {
- if (this.comment === "" || this.comment.length < 50) {
+ if (this.comment === '' || this.comment.length < 50) {
this.isValid = false;
this.commentError =
- "Reason should not be empty or less than 50 character!";
+ 'Reason should not be empty or less than 50 character!';
return false;
}
data = {
- Entity: "condensate_protein",
+ Entity: 'condensate_protein',
EntityId: entityId,
- ChangeOperation: "remove",
- Attribute: "pubmed_ids",
+ ChangeOperation: 'remove',
+ Attribute: 'pubmed_ids',
Value: this.pubmedId,
SubmissionComments: this.comment,
- Status: "requested",
+ Status: 'requested',
};
}
- } else if (this.mode === "protein" && this.actionType === "Add") {
+ } else if (this.mode === 'protein' && this.actionType === 'Add') {
//val
if (!this.inputValidation(this.data)) {
return;
}
- if (this.role === "Maintainer") {
+ if (this.role === 'Maintainer') {
data = {
- Entity: "protein",
+ Entity: 'protein',
EntityId: this.data.uniprot_id,
- ChangeOperation: "add",
- Attribute: "proteins",
+ ChangeOperation: 'add',
+ Attribute: 'proteins',
Value: this.pubmedId,
SubmissionComments: this.comment
? this.comment
- : "Maintainer do not need to provide a reason for such change at the moment!",
- Status: "accepted",
+ : 'Maintainer do not need to provide a reason for such change at the moment!',
+ Status: 'accepted',
};
} else {
- if (this.comment === "" || this.comment.length < 50) {
+ if (this.comment === '' || this.comment.length < 50) {
this.isValid = false;
this.commentError =
- "Reason should not be empty or less than 50 character!";
+ 'Reason should not be empty or less than 50 character!';
return false;
}
data = {
- Entity: "protein",
+ Entity: 'protein',
EntityId: this.data.uniprot_id,
- ChangeOperation: "add",
- Attribute: "proteins",
+ ChangeOperation: 'add',
+ Attribute: 'proteins',
Value: this.pubmedId,
SubmissionComments: this.comment,
- Status: "requested",
+ Status: 'requested',
};
}
- } else if (this.mode === "protein" && this.actionType === "Delete") {
+ } else if (this.mode === 'protein' && this.actionType === 'Delete') {
if (!this.inputValidation(this.data)) {
return;
}
- this.message = "";
- if (this.pubmedId === "") {
+ this.message = '';
+ if (this.pubmedId === '') {
this.isValid = false;
- this.error = "Please select a pubmed id to remove!";
+ this.error = 'Please select a pubmed id to remove!';
return;
}
- if (this.role === "Maintainer") {
+ if (this.role === 'Maintainer') {
data = {
- Entity: "protein",
+ Entity: 'protein',
EntityId: this.data.uniprot_id,
- ChangeOperation: "remove",
- Attribute: "proteins",
+ ChangeOperation: 'remove',
+ Attribute: 'proteins',
Value: this.pubmedId,
SubmissionComments: this.comment
? this.comment
- : "Maintainer do not need to provide a reason for such change at the moment!",
- Status: "accepted",
+ : 'Maintainer do not need to provide a reason for such change at the moment!',
+ Status: 'accepted',
};
} else {
- if (this.comment === "" || this.comment.length < 50) {
+ if (this.comment === '' || this.comment.length < 50) {
this.isValid = false;
this.commentError =
- "Reason should not be empty or less than 50 character!";
+ 'Reason should not be empty or less than 50 character!';
return false;
}
data = {
- Entity: "protein",
+ Entity: 'protein',
EntityId: this.data.uniprot_id,
- ChangeOperation: "remove",
- Attribute: "proteins",
+ ChangeOperation: 'remove',
+ Attribute: 'proteins',
Value: this.pubmedId,
SubmissionComments: this.comment,
- Status: "requested",
+ Status: 'requested',
};
}
}
this.isValid = true;
- this.error = "";
- this.message = "";
+ this.error = '';
+ this.message = '';
this.isLoading = true;
this.toasterIsOpen = true;
@@ -847,12 +872,12 @@ export default {
this.isLoading = false;
this.isValid = true;
- this.comment = "";
- this.error = "";
+ this.comment = '';
+ this.error = '';
this.serverError = false;
- this.pubmedId = "";
- this.commentError = "";
- this.$emit("update-key");
+ this.pubmedId = '';
+ this.commentError = '';
+ this.$emit('update-key');
setTimeout(() => {
this.toasterIsOpen = false;
}, 2000);
@@ -861,59 +886,59 @@ export default {
this.isLoading = false;
this.serverError = true;
this.message =
- e.message || "Something went wrong, please try again later!";
+ e.message || 'Something went wrong, please try again later!';
}
},
selectPubmedId() {
- this.error = "";
- this.serverError = "";
+ this.error = '';
+ this.serverError = '';
},
close() {
- this.$emit("cancel");
+ this.$emit('cancel');
},
closeAddPubmed() {
- this.$emit("closeToggleAddPubmed");
+ this.$emit('closeToggleAddPubmed');
},
closeDeletePubmed() {
- this.$emit("closeToggleDeletePubmed");
+ this.$emit('closeToggleDeletePubmed');
},
validation(e) {
- if (this.pubmedId === "") {
+ if (this.pubmedId === '') {
this.isValid = false;
- this.error = "Pubmed Id should not be empty!";
+ this.error = 'Pubmed Id should not be empty!';
return false;
}
if (e.keyCode === 32) {
this.isValid = false;
- this.error = "Pubmed Id should not have empty space!";
+ this.error = 'Pubmed Id should not have empty space!';
return false;
}
if (this.whitespaceRegex.test(this.pubmedId)) {
this.isValid = false;
- this.error = "Pubmed Id should not have empty space!";
+ this.error = 'Pubmed Id should not have empty space!';
return false;
}
this.isValid = true;
- this.message = "";
- this.error = "";
+ this.message = '';
+ this.error = '';
return true;
},
selectValue() {
- if (this.actionType === "Add") {
- this.error = "";
- this.commentError = "";
- this.message = "";
- this.buttonText = "Add";
- (this.pubmedId = ""), (this.isValid = true);
+ if (this.actionType === 'Add') {
+ this.error = '';
+ this.commentError = '';
+ this.message = '';
+ this.buttonText = 'Add';
+ (this.pubmedId = ''), (this.isValid = true);
this.showAddPubmedId = true;
this.showButtons = true;
this.showDeletePubmedId = false;
- } else if (this.actionType === "Delete") {
- this.buttonText = "Delete";
- this.error = "";
- this.commentError = "";
- this.message = "";
+ } else if (this.actionType === 'Delete') {
+ this.buttonText = 'Delete';
+ this.error = '';
+ this.commentError = '';
+ this.message = '';
this.showDeletePubmedId = true;
this.showButtons = true;
this.showAddPubmedId = false;
diff --git a/web/src/components/CondensateDetailPage.vue b/web/src/components/CondensateDetailPage.vue
index 6895133..a896f76 100644
--- a/web/src/components/CondensateDetailPage.vue
+++ b/web/src/components/CondensateDetailPage.vue
@@ -1,6 +1,9 @@
<template>
<div>
- <base-toaster :open="toasterIsOpen" @close="hideDialog">
+ <base-toaster
+ :open="toasterIsOpen"
+ @close="hideDialog"
+ >
<div class="flex justify-between items-center">
<font-awesome-icon
class="ml-3"
@@ -9,8 +12,14 @@
/>
<h4>Request submitted successfully!</h4>
- <button class="btn btn-outline" @click="hideDialog">
- <font-awesome-icon icon="fa-regular fa-circle-xmark" size="2x" />
+ <button
+ class="btn btn-outline"
+ @click="hideDialog"
+ >
+ <font-awesome-icon
+ icon="fa-regular fa-circle-xmark"
+ size="2x"
+ />
</button>
</div>
</base-toaster>
@@ -41,7 +50,10 @@
<base-spinner />
</div>
<div>
- <h2 v-if="fetchError" class="text-red-500">
+ <h2
+ v-if="fetchError"
+ class="text-red-500"
+ >
{{ fetchError }}
</h2>
</div>
@@ -55,7 +67,7 @@
<button
v-if="
getUserData !== null &&
- (getUserData === 'Maintainer' ||
+ (getUserData === 'Maintainer' ||
getUserData === 'Contributor')
"
class="rounded-lg px-5 py-4 text-center"
@@ -87,8 +99,7 @@
<label
for="condensateName"
class="control-label col-sm-2"
- >Name</label
- >
+ >Name</label>
<div class="col-sm-10">
<div class="w-1/4">
<input
@@ -98,7 +109,7 @@
type="text"
placeholder="Enter condensate name."
@keyup="validateName"
- />
+ >
<p
v-if="nameError && nameErrMsg"
class="text-red-500 mt-2 text-2xl font-bold"
@@ -113,8 +124,7 @@
<label
for="condensateName"
class="control-label col-sm-2"
- >Reason</label
- >
+ >Reason</label>
<div class="col-sm-10">
<div class="w-3/4">
<textarea
@@ -197,7 +207,9 @@
</div>
</form>
</div>
- <h4 class="round">General Information</h4>
+ <h4 class="round">
+ General Information
+ </h4>
<div
class="
bg-white
@@ -217,7 +229,9 @@
</div>
</div> -->
<div class="row">
- <div class="text col-sm-3 text-2xl">Species</div>
+ <div class="text col-sm-3 text-2xl">
+ Species
+ </div>
<div class="col-sm-9 text-2xl">
{{ response.data.species_name }} ({{
response.data.species_tax_id
@@ -225,13 +239,15 @@
</div>
</div>
<div class="row text-2xl">
- <div class="text col-sm-3">Description</div>
+ <div class="text col-sm-3">
+ Description
+ </div>
<div class="col-sm-9 text-2xl">
{{ response.data.description }}
<button
v-if="
getUserData !== null &&
- (getUserData === 'Maintainer' ||
+ (getUserData === 'Maintainer' ||
getUserData === 'Contributor')
"
class="btn btn-primary btn-link"
@@ -261,8 +277,7 @@
<label
class="control-label col-sm-2"
for="keyword"
- >Update description</label
- >
+ >Update description</label>
<div class="col-sm-10">
<textarea
id="comment"
@@ -303,8 +318,7 @@
<label
class="control-label col-sm-2"
for="funComment"
- >Reason</label
- >
+ >Reason</label>
<div class="col-sm-10">
<textarea
@@ -439,7 +453,7 @@
<button
v-if="
getUserData !== null &&
- (getUserData === 'Maintainer' ||
+ (getUserData === 'Maintainer' ||
getUserData === 'Contributor')
"
class="btn btn-primary btn-link"
@@ -461,13 +475,17 @@
</div>
<div class="row text-2xl">
- <div class="text col-sm-3">No. of Proteins</div>
+ <div class="text col-sm-3">
+ No. of Proteins
+ </div>
<div class="col-sm-9">
{{ response.data.protein_count }}
</div>
</div>
<div class="row text-2xl">
- <div class="text col-sm-3 text-2xl">Evidence star</div>
+ <div class="text col-sm-3 text-2xl">
+ Evidence star
+ </div>
<div class="flex col-sm-9">
<star-rating
:star-size="20"
@@ -487,7 +505,9 @@
</div>
<div v-show="response.data.experiments.length > 0">
- <h4 class="round">Experiments</h4>
+ <h4 class="round">
+ Experiments
+ </h4>
<div class="panel panel-default">
<table class="csi table table-hover table-responsive">
<thead>
@@ -583,8 +603,8 @@
<button
v-if="
getUserData !== null &&
- !response.data.is_experimental &&
- (getUserData === 'Maintainer' ||
+ !response.data.is_experimental &&
+ (getUserData === 'Maintainer' ||
getUserData === 'Contributor')
"
class="
@@ -605,7 +625,10 @@
>
Add a protein to this condensate
</button>
- <div v-if="showAddProtein" class="panel panel-default mt-4">
+ <div
+ v-if="showAddProtein"
+ class="panel panel-default mt-4"
+ >
<div class="panel-body">
<div class="container-fluid col-md-12">
<div v-if="isLoading">
@@ -617,9 +640,10 @@
@submit.prevent="addProtein(response)"
>
<div class="form-group">
- <label class="control-label col-sm-2" for="species"
- >Add protein with uniprot ID</label
- >
+ <label
+ class="control-label col-sm-2"
+ for="species"
+ >Add protein with uniprot ID</label>
<div class="col-sm-4 text-2xl">
<div class="flex">
<input
@@ -629,7 +653,7 @@
type="text"
placeholder="Uniprot ID. (e.g. P35637)"
@keyup="uniprotKeyup"
- />
+ >
<a
class="
@@ -646,15 +670,16 @@
<p
v-if="isUniProtIdError"
- v-html="uniprotIdErrorMsg"
class="text-red-600 mt-4 font-bold"
- ></p>
+ v-html="uniprotIdErrorMsg"
+ />
</div>
</div>
<div class="form-group">
- <label class="control-label col-sm-2" for="keyword"
- >Reason</label
- >
+ <label
+ class="control-label col-sm-2"
+ for="keyword"
+ >Reason</label>
<div class="col-sm-8">
<textarea
id="comment"
@@ -800,7 +825,9 @@
/>
</div>
<div class="my-14 border border-gray-300 rounded-lg p-8">
- <h4 class="round mb-8">Top Contributors</h4>
+ <h4 class="round mb-8">
+ Top Contributors
+ </h4>
<contributor-list-table
:id="response.data.canonical_id"
entity="condensate"
@@ -858,26 +885,26 @@
</template>
<script>
-import fetchCondensate from "@/components/DDCODE/fetchCondensate.vue";
-import llpsTable from "@/components/LlpsTable.vue";
-import fetchPubMed from "@/components/DDCODE/fetchPubMed";
-import AddDeleteMarker from "./CMS/addDeleteMarker.vue";
-import BaseSpinner from "./UI/BaseSpinner.vue";
-import CondensateUpdateItemsTable from "./CondensateUpdateItemsTable.vue";
-import BaseToaster from "./UI/BaseToaster.vue";
-import StarRating from "vue-star-rating";
-import ContributorListTable from "./ContributorListTable.vue";
+import fetchCondensate from '@/components/DDCODE/fetchCondensate.vue';
+import llpsTable from '@/components/LlpsTable.vue';
+import fetchPubMed from '@/components/DDCODE/fetchPubMed';
+import AddDeleteMarker from './CMS/addDeleteMarker.vue';
+import BaseSpinner from './UI/BaseSpinner.vue';
+import CondensateUpdateItemsTable from './CondensateUpdateItemsTable.vue';
+import BaseToaster from './UI/BaseToaster.vue';
+import StarRating from 'vue-star-rating';
+import ContributorListTable from './ContributorListTable.vue';
//import FetchUserSpecificUpdateItems from './CMS/fetchUserSpecificUpdateItems.vue';
//import RequestUpdateItemTable from "./RequestUpdateItemTable.vue";
// import TheModal from './UI/TheModal.vue';
-const _ = require("lodash");
-require("./js/clipboard");
+const _ = require('lodash');
+require('./js/clipboard');
-let host = require("./js/const").apiHost;
+let host = require('./js/const').apiHost;
export default {
- name: "CondensateDetailPage",
+ name: 'CondensateDetailPage',
components: {
fetchCondensate,
llpsTable,
@@ -892,39 +919,39 @@ export default {
// RequestUpdateItemTable,
},
- props: ["condensateId"],
+ props: ['condensateId'],
data() {
return {
condensate: this.$route.params.condensate
? this.$route.params.condensate
: this.condensateId,
- dbNames: require("./js/const").db,
- isDev: process.env.NODE_ENV === "development",
+ dbNames: require('./js/const').db,
+ isDev: process.env.NODE_ENV === 'development',
showAddProtein: false,
- uniprotId: "",
- comment: "",
- proteinComment: "",
- condensateNameComment: "",
- condensateNameCommentErrMsg: "",
- markerComment: "",
- descriptionComment: "",
- description: "",
- descriptionMsg: "",
- condensateName: "",
- descriptionErrorMsg: "",
+ uniprotId: '',
+ comment: '',
+ proteinComment: '',
+ condensateNameComment: '',
+ condensateNameCommentErrMsg: '',
+ markerComment: '',
+ descriptionComment: '',
+ description: '',
+ descriptionMsg: '',
+ condensateName: '',
+ descriptionErrorMsg: '',
isUniProtIdError: false,
isCommentError: false,
isSubmitted: false,
error: false,
showUpdateDescription: false,
showAddDeleteMarker: false,
- commentErrorMsg: "",
+ commentErrorMsg: '',
descriptionCommentErr: false,
nameCommentErr: false,
proteinCommentErr: false,
markerCommentErr: false,
- uniprotIdErrorMsg: "",
- message: "",
+ uniprotIdErrorMsg: '',
+ message: '',
whitespaceRegex: /(\s)/,
nameError: false,
toggleModel: false,
@@ -936,10 +963,10 @@ export default {
},
computed: {
jwt: function () {
- return this.$store.getters["User/jwt"];
+ return this.$store.getters['User/jwt'];
},
getUserData() {
- const userRole = this.$store.getters["User/userRole"];
+ const userRole = this.$store.getters['User/userRole'];
return userRole;
},
@@ -947,7 +974,7 @@ export default {
methods: {
validateName() {
- (this.nameErrMsg = ""), (this.nameError = false);
+ (this.nameErrMsg = ''), (this.nameError = false);
},
showDialog() {
this.toasterIsOpen = true;
@@ -963,83 +990,83 @@ export default {
},
toggleChangeName() {
this.changeName = !this.changeName;
- this.condensateName = "";
+ this.condensateName = '';
},
closeAddDeleteMarker() {
- this.comment = "";
+ this.comment = '';
this.showAddDeleteMarker = false;
},
uniprotKeyup() {
- this.message = "";
+ this.message = '';
this.isUniProtIdError = false;
},
commentKeyup() {
- this.message = "";
+ this.message = '';
this.descriptionCommentErr = false;
this.isCommentError = false;
},
descriptionKeyup() {
- this.descriptionMsg = "";
- this.descriptionErrorMsg = "";
+ this.descriptionMsg = '';
+ this.descriptionErrorMsg = '';
},
toggleUpdateDescription(res) {
this.description = res;
- this.descriptionMsg = "";
- this.descriptionErrorMsg = "";
+ this.descriptionMsg = '';
+ this.descriptionErrorMsg = '';
this.descriptionCommentErr = false;
- this.descriptionComment = "";
+ this.descriptionComment = '';
this.showUpdateDescription = !this.showUpdateDescription;
},
validateProteinComment() {
this.proteinCommentErr = false;
- this.commentErrorMsg = "";
+ this.commentErrorMsg = '';
},
async changeCondensateName(response) {
if (!this.condensateName) {
this.nameError = true;
- this.nameErrMsg = "Enter a condensate name.";
+ this.nameErrMsg = 'Enter a condensate name.';
return;
}
this.nameError = false;
- this.nameErrMsg = "";
+ this.nameErrMsg = '';
if (this.isDev) {
- host = require("./js/const").devApiHost;
+ host = require('./js/const').devApiHost;
}
let url = `${host}/api/update-items`;
let data;
- if (this.getUserData === "Maintainer") {
+ if (this.getUserData === 'Maintainer') {
data = {
- Entity: "condensate",
+ Entity: 'condensate',
EntityId: response.data.canonical_id,
- ChangeOperation: "update",
- Attribute: "name",
+ ChangeOperation: 'update',
+ Attribute: 'name',
Value: this.condensateName,
SubmissionComments: this.condensateNameComment
? this.condensateNameComment
- : "Maintainer do not need to provide a reason for such change at the moment!",
- Status: "accepted",
+ : 'Maintainer do not need to provide a reason for such change at the moment!',
+ Status: 'accepted',
};
} else {
if (
- this.condensateNameComment === "" ||
+ this.condensateNameComment === '' ||
this.condensateNameComment.length < 50
) {
this.nameCommentErr = true;
this.condensateNameCommentErrMsg =
- "Reason should not be empty or less than 50 characters!";
+ 'Reason should not be empty or less than 50 characters!';
return;
}
data = {
- Entity: "condensate",
+ Entity: 'condensate',
EntityId: response.data.canonical_id,
- ChangeOperation: "update",
- Attribute: "name",
+ ChangeOperation: 'update',
+ Attribute: 'name',
Value: this.condensateName,
SubmissionComments: this.condensateNameComment,
- Status: "requested",
+ Status: 'requested',
};
}
this.isLoading = true;
@@ -1056,9 +1083,9 @@ export default {
this.isLoading = false;
this.toasterIsOpen = true;
this.nameCommentErr = false;
- this.condensateNameCommentErrMsg = "";
- this.condensateNameComment = "";
- this.condensateName = "";
+ this.condensateNameCommentErrMsg = '';
+ this.condensateNameComment = '';
+ this.condensateName = '';
this.updatedKey += 1;
setTimeout(() => {
this.toasterIsOpen = false;
@@ -1068,56 +1095,56 @@ export default {
this.isLoading = false;
this.nameCommentErr = true;
this.condensateNameCommentErrMsg =
- e.message || "Something went wrong, please try again later!";
+ e.message || 'Something went wrong, please try again later!';
}
},
async updateDescription(response) {
- if (this.description === "") {
- this.descriptionErrorMsg = "Description should not be empty!";
+ if (this.description === '') {
+ this.descriptionErrorMsg = 'Description should not be empty!';
return;
} else if (this.description === response.data.description) {
this.descriptionErrorMsg =
- "You have not added any description. Please modify the existing description.";
- this.descriptionMsg = "";
+ 'You have not added any description. Please modify the existing description.';
+ this.descriptionMsg = '';
return;
}
if (this.isDev) {
- host = require("./js/const").devApiHost;
+ host = require('./js/const').devApiHost;
}
let url = `${host}/api/update-items`;
let data;
- if (this.getUserData === "Maintainer") {
+ if (this.getUserData === 'Maintainer') {
data = {
- Entity: "condensate",
+ Entity: 'condensate',
EntityId: response.data.canonical_id,
- ChangeOperation: "update",
- Attribute: "description",
+ ChangeOperation: 'update',
+ Attribute: 'description',
Value: this.description,
SubmissionComments: this.descriptionComment
? this.descriptionComment
- : "Maintainer do not need to provide a reason for such change at the moment!",
- Status: "accepted",
+ : 'Maintainer do not need to provide a reason for such change at the moment!',
+ Status: 'accepted',
};
} else {
if (
- this.descriptionComment === "" ||
+ this.descriptionComment === '' ||
this.descriptionComment.length < 50
) {
this.descriptionCommentErr = true;
this.commentErrorMsg =
- "Reason should not be empty or less than 50 characters!";
+ 'Reason should not be empty or less than 50 characters!';
return;
}
data = {
- Entity: "condensate",
+ Entity: 'condensate',
EntityId: response.data.canonical_id,
- ChangeOperation: "update",
- Attribute: "description",
+ ChangeOperation: 'update',
+ Attribute: 'description',
Value: this.description,
SubmissionComments: this.descriptionComment,
- Status: "requested",
+ Status: 'requested',
};
}
this.isLoading = true;
@@ -1134,11 +1161,11 @@ export default {
this.isLoading = false;
this.toasterIsOpen = true;
this.descriptionCommentErr = false;
- this.descriptionComment = "";
- this.descriptionErrorMsg = "";
+ this.descriptionComment = '';
+ this.descriptionErrorMsg = '';
this.description = response.data.description;
- this.commentErrorMsg = "";
- this.comment = "";
+ this.commentErrorMsg = '';
+ this.comment = '';
this.isCommentError = false;
this.updatedKey += 1;
setTimeout(() => {
@@ -1146,15 +1173,15 @@ export default {
}, 2000);
} catch (e) {
console.error(e);
- this.descriptionMsg = "";
+ this.descriptionMsg = '';
this.descriptionErrorMsg =
- e.message || "Something went wrong, please try again later!";
+ e.message || 'Something went wrong, please try again later!';
}
},
async uniprotIdValidation(id) {
try {
const res = await fetch(`https://www.uniprot.org/uniprot/${id}`, {
- method: "HEAD",
+ method: 'HEAD',
});
const response = await res;
if (!response.ok && response.status === 404) {
@@ -1171,15 +1198,15 @@ export default {
>mail@cd-code.org</a> for further assist. `,
};
} else {
- return { valid: true, msg: "Valid Uniprot ID." };
+ return { valid: true, msg: 'Valid Uniprot ID.' };
}
} catch (err) {
- console.log("error", err);
+ console.log('error', err);
return {
valid: false,
msg:
err.message +
- "." +
+ '.' +
`Please contact CD-CODE admin <a
href="mailto:mail@cd-code.org"
class="text-blue-500 hover:text-blue-700"
@@ -1188,21 +1215,21 @@ export default {
}
},
async addProtein(response) {
- if (this.uniprotId === "") {
- this.uniprotIdErrorMsg = "Uniprot ID should not be empty!";
+ if (this.uniprotId === '') {
+ this.uniprotIdErrorMsg = 'Uniprot ID should not be empty!';
this.isUniProtIdError = true;
return;
} else if (this.uniprotId.length < 6) {
- this.uniprotIdErrorMsg = "Uniprot ID should be minimum of 6 character.";
+ this.uniprotIdErrorMsg = 'Uniprot ID should be minimum of 6 character.';
this.isUniProtIdError = true;
return;
} else if (this.uniprotId.length > 10) {
this.uniprotIdErrorMsg =
- "Uniprot ID should be maximum of 10 character.";
+ 'Uniprot ID should be maximum of 10 character.';
this.isUniProtIdError = true;
return;
} else if (this.whitespaceRegex.test(this.uniprotId)) {
- this.uniprotIdErrorMsg = "Uniprot ID should not have space in between.";
+ this.uniprotIdErrorMsg = 'Uniprot ID should not have space in between.';
this.isUniProtIdError = true;
return;
}
@@ -1210,7 +1237,7 @@ export default {
const validUniprot = await this.uniprotIdValidation(this.uniprotId);
if (!validUniprot.valid) {
- this.message = "";
+ this.message = '';
this.uniprotIdErrorMsg = validUniprot.msg;
this.isUniProtIdError = true;
return;
@@ -1220,46 +1247,46 @@ export default {
(u) => u.uniprot_id === this.uniprotId
);
if (findUniprotId) {
- this.message = "";
- this.uniprotIdErrorMsg = "The Uniprot ID already exists!";
+ this.message = '';
+ this.uniprotIdErrorMsg = 'The Uniprot ID already exists!';
this.isUniProtIdError = true;
return;
}
this.isError = false;
if (this.isDev) {
- host = require("./js/const").devApiHost;
+ host = require('./js/const').devApiHost;
}
let url = `${host}/api/update-items`;
let data;
- if (this.getUserData === "Maintainer") {
+ if (this.getUserData === 'Maintainer') {
data = {
- Entity: "condensate",
+ Entity: 'condensate',
EntityId: response.data.canonical_id,
- ChangeOperation: "add",
- Attribute: "proteins",
+ ChangeOperation: 'add',
+ Attribute: 'proteins',
Value: this.uniprotId,
SubmissionComments: this.proteinComment
? this.proteinComment
- : "Maintainer do not need to provide a reason for such change at the moment!",
- Status: "accepted",
+ : 'Maintainer do not need to provide a reason for such change at the moment!',
+ Status: 'accepted',
};
} else {
- if (this.proteinComment === "" || this.proteinComment.length < 50) {
+ if (this.proteinComment === '' || this.proteinComment.length < 50) {
this.proteinCommentErr = true;
this.commentErrorMsg =
- "Reason should not be empty or less than 50 characters!";
+ 'Reason should not be empty or less than 50 characters!';
return;
}
data = {
- Entity: "condensate",
+ Entity: 'condensate',
EntityId: response.data.canonical_id,
- ChangeOperation: "add",
- Attribute: "proteins",
+ ChangeOperation: 'add',
+ Attribute: 'proteins',
Value: this.uniprotId,
SubmissionComments: this.proteinComment,
- Status: "requested",
+ Status: 'requested',
};
}
this.isLoading = true;
@@ -1279,10 +1306,10 @@ export default {
this.error = false;
this.isSubmitted = true;
- this.uniprotId = "";
- this.comment = "";
+ this.uniprotId = '';
+ this.comment = '';
this.proteinCommentErr = false;
- this.commentErrorMsg = "";
+ this.commentErrorMsg = '';
this.updatedKey += 1;
setTimeout(() => {
this.toasterIsOpen = false;
@@ -1290,7 +1317,7 @@ export default {
} catch (e) {
console.error(e);
this.message =
- e.message || "Something went wrong, please try again later!";
+ e.message || 'Something went wrong, please try again later!';
this.isSubmitted = true;
this.error = true;
}
@@ -1352,17 +1379,17 @@ export default {
(a) =>
`<a href='/protein/${a}' class="link" target='_blank'>${a}</a>`
)
- .join(", ");
- else return "";
+ .join(', ');
+ else return '';
},
getDbNames(names) {
- return _.map(names, (i) => this.dbNames[i]).join(", ");
+ return _.map(names, (i) => this.dbNames[i]).join(', ');
},
getTitleAuthors(title, data) {
- return `${title}\n\n${_.map(data, (a) => a.name).join(", ")}`;
+ return `${title}\n\n${_.map(data, (a) => a.name).join(', ')}`;
},
tokenize(input, token) {
- return input.replaceAll(token, "<br/>");
+ return input.replaceAll(token, '<br/>');
},
},
};
diff --git a/web/src/components/DDCODE/fetchCondensate.vue b/web/src/components/DDCODE/fetchCondensate.vue
index 1e33bdb..c424f86 100644
--- a/web/src/components/DDCODE/fetchCondensate.vue
+++ b/web/src/components/DDCODE/fetchCondensate.vue
@@ -1,26 +1,30 @@
<template>
<div class="mainContent">
- <slot :response="response" :loading="loading" :fetchError="fetchError" />
+ <slot
+ :response="response"
+ :loading="loading"
+ :fetchError="fetchError"
+ />
</div>
</template>
<script>
-import LoginVue from "../../views/Login.vue";
+import LoginVue from '../../views/Login.vue';
// require modules
/* eslint-disable no-unused-vars */
-const _ = require("lodash");
-let host = require("../js/const").host;
-const apikey = require("../js/const").apikey;
+const _ = require('lodash');
+let host = require('../js/const').host;
+const apikey = require('../js/const').apikey;
export default {
- name: "FetchCondensate",
- props: ["condensate"],
+ name: 'FetchCondensate',
+ props: ['condensate'],
data() {
return {
response: null,
loading: false,
- fetchError: "",
- isDev: process.env.NODE_ENV === "development",
+ fetchError: '',
+ isDev: process.env.NODE_ENV === 'development',
};
},
mounted() {
@@ -39,20 +43,20 @@ export default {
vm.loading = true;
if (vm.isDev) {
- host = require("../js/const").devHost;
+ host = require('../js/const').devHost;
}
let url = `${host}/condensates/${vm.condensate}`;
- console.log("url is", url);
+ console.log('url is', url);
if (vm.condensate && !_.isEmpty(vm.condensate)) {
// console.log('True');
try {
const res = await fetch(url, {
- method: "GET",
- mode: "cors",
- cache: "no-cache",
+ method: 'GET',
+ mode: 'cors',
+ cache: 'no-cache',
headers: {
Authorization: `Bearer ${apikey}`,
},
@@ -60,11 +64,11 @@ export default {
if (!res.ok) {
vm.loading = false;
- vm.response = "";
+ vm.response = '';
vm.fetchError = `${res.status} Internal Error, please write a mail to CDCode Admin.`;
return;
}
- vm.fetchError = "";
+ vm.fetchError = '';
const response = await res.json();
setTimeout(() => {
vm.loading = false;
@@ -92,14 +96,14 @@ export default {
// }, 10);
// });
} catch (err) {
- console.log("in catch", err.message);
+ console.log('in catch', err.message);
vm.loading = false;
- vm.response = "";
+ vm.response = '';
vm.fetchError = `${err.message} Internal Error, please write a mail to CDCode Admin.`;
}
} else {
vm.loading = false;
- vm.response = "";
+ vm.response = '';
}
},
},
diff --git a/web/src/components/Datatable/CondensateDataTable.vue b/web/src/components/Datatable/CondensateDataTable.vue
index 76e876f..2247147 100644
--- a/web/src/components/Datatable/CondensateDataTable.vue
+++ b/web/src/components/Datatable/CondensateDataTable.vue
@@ -1,6 +1,9 @@
<template>
<div>
- <h2 v-if="error" class="text-red-500">
+ <h2
+ v-if="error"
+ class="text-red-500"
+ >
{{ errorMsg }}
</h2>
<div v-if="!error">
@@ -15,11 +18,11 @@
</template>
<script>
-const _ = require("lodash");
-let host = require("../js/const").host;
-const apikey = require("../js/const").apikey;
-const $ = (window.jQuery = require("jquery"));
-require("../js/datatable");
+const _ = require('lodash');
+let host = require('../js/const').host;
+const apikey = require('../js/const').apikey;
+const $ = (window.jQuery = require('jquery'));
+require('../js/datatable');
let table;
@@ -39,22 +42,22 @@ function getRating(data) {
}
}
- r.push("</div>");
+ r.push('</div>');
return r;
}
export default {
- name: "DataTable",
- props: ["id", "data", "category", "isExperimental"],
+ name: 'DataTable',
+ props: ['id', 'data', 'category', 'isExperimental'],
data() {
return {
rows: [],
header: [],
total: 0,
- downloadUrl: "",
+ downloadUrl: '',
error: false,
- errorMsg: "",
- isDev: process.env.NODE_ENV === "development",
+ errorMsg: '',
+ isDev: process.env.NODE_ENV === 'development',
};
},
mounted() {
@@ -68,7 +71,7 @@ export default {
} else if (this.isExperimental === false) {
return `&is_experimental=false`;
} else if (!this.isExperimental) {
- return "";
+ return '';
}
},
moveDetailPage(id) {
@@ -85,8 +88,8 @@ export default {
const columns = [
{
- title: "Name",
- data: "name",
+ title: 'Name',
+ data: 'name',
fnCreatedCell: (nTd, sData, oData) => {
$(nTd).html(`<a href="" class="detail-link"> ${oData.name}</a>`);
},
@@ -106,25 +109,25 @@ export default {
// },
// },
{
- title: "No. Proteins",
+ title: 'No. Proteins',
render: function (data, type, row, meta) {
return row.protein_count;
},
},
{
- title: "Species",
- data: "species_name",
+ title: 'Species',
+ data: 'species_name',
render: function (data, type, row, meta) {
if (data) {
- return data + " (" + row.species_tax_id + ")";
+ return data + ' (' + row.species_tax_id + ')';
} else {
- return "Chimeras";
+ return 'Chimeras';
}
},
},
{
- title: "Confidence Score",
- data: "confidence_score",
+ title: 'Confidence Score',
+ data: 'confidence_score',
defaultContent: `0`,
render: function (data, type, row, meta) {
return data;
@@ -132,9 +135,9 @@ export default {
fnCreatedCell: (nTd, sData, oData) => {
// console.log(sData)
if (sData) {
- $(nTd).html(getRating(sData).join("\n"));
+ $(nTd).html(getRating(sData).join('\n'));
} else {
- $(nTd).html(getRating(0).join("\n"));
+ $(nTd).html(getRating(0).join('\n'));
}
},
},
@@ -142,7 +145,7 @@ export default {
const nTableOptions = {
columns,
- aaSorting: [[0, "asc"]],
+ aaSorting: [[0, 'asc']],
stateSave: true,
paging: true,
searching: true,
@@ -153,10 +156,10 @@ export default {
oSettings.jqXHR = vm.fetchCallback(vm.rows, aoData, fnCallback);
},
pageLength: 50,
- order: [[2, "desc"]], // order: [[0, 'asc']],
+ order: [[2, 'desc']], // order: [[0, 'asc']],
bDestroy: true, // Add this property to new setting,
oLanguage: {
- sSearch: "Filter ",
+ sSearch: 'Filter ',
},
dom: '<"row"<"col-sm-8"f><"#download.col-sm-4">><"row"t><"row"<"col-sm-4"i><"col-sm-8"p>>',
// dom: '<"row"<"col-sm-4"l><"col-sm-6"f><"#download.col-sm-2">><"row"t><"row"<"col-sm-4"i><"col-sm-8"p>>'
@@ -170,17 +173,17 @@ export default {
table = $(tableId).DataTable(nTableOptions);
- $("#download").html(
+ $('#download').html(
'<div style="text-align: right;"><div class="dropdown">\n' +
' <button class="btn download-link" type="button" id="dropdownMenuButton">\n' +
- " Download CSV\n" +
- " </button>\n" +
- "</div></div>"
+ ' Download CSV\n' +
+ ' </button>\n' +
+ '</div></div>'
);
const tableBody = `${tableId} tbody`;
- $(tableBody).on("click", "tr td a.detail-link", (e) => {
+ $(tableBody).on('click', 'tr td a.detail-link', (e) => {
e.preventDefault();
const tr = $(e.target).parent().parent();
const row = table.row(tr);
@@ -188,7 +191,7 @@ export default {
vm.moveDetailPage(row.data().canonical_id);
});
- $("#download").on("click", (e) => {
+ $('#download').on('click', (e) => {
e.preventDefault();
vm.downloadCsv();
});
@@ -197,11 +200,11 @@ export default {
let vm = this;
// console.log(aoData)
- let orderItem = aoData.find((x) => x.name === "order");
- let startItem = aoData.find((x) => x.name === "start");
- let lengthItem = aoData.find((x) => x.name === "length");
- let searchItem = aoData.find((x) => x.name === "search");
- let functionalType = aoData.find((x) => x.name === "columns").value[3];
+ let orderItem = aoData.find((x) => x.name === 'order');
+ let startItem = aoData.find((x) => x.name === 'start');
+ let lengthItem = aoData.find((x) => x.name === 'length');
+ let searchItem = aoData.find((x) => x.name === 'search');
+ let functionalType = aoData.find((x) => x.name === 'columns').value[3];
// console.log(functionalType.search.value)
// console.log(`length = ${lengthItem.value}, offset = ${startItem.value}`)
@@ -212,17 +215,17 @@ export default {
let search = searchItem.value.value;
const columns = [
- "name",
- "protein_count",
- "species_name",
- "confidence_score",
+ 'name',
+ 'protein_count',
+ 'species_name',
+ 'confidence_score',
];
let order = [];
if (orderItem.value.length > 0) {
orderItem.value.forEach(function (data) {
// console.log(data)
- if (data.dir === "desc") {
+ if (data.dir === 'desc') {
order.push(`-${columns[data.column]}`);
} else {
order.push(`${columns[data.column]}`);
@@ -232,25 +235,25 @@ export default {
}
if (vm.isDev) {
- host = require("../js/const").devHost;
+ host = require('../js/const').devHost;
}
vm.downloadUrl =
`${host}/condensates?fields=biomarkers,canonical_id,description,is_experimental,name,protein_count,proteins,species_name,species_tax_id,synonyms,confidence_score&size=50000` +
- (order.length > 0 ? `&sort=${order.join(",")}` : "") +
- (search ? `&query=${search}` : "") +
+ (order.length > 0 ? `&sort=${order.join(',')}` : '') +
+ (search ? `&query=${search}` : '') +
(functionalType.search.value
? `&functional_type=${functionalType.search.value}`
- : "") +
+ : '') +
this.hasExperimental();
let url =
`${host}/condensates?fields=biomarkers,canonical_id,description,is_experimental,name,protein_count,proteins,species_name,species_tax_id,synonyms,confidence_score&size=50&page=${page}` +
- (order.length > 0 ? `&sort=${order.join(",")}` : "") +
- (search ? `&query=${search}` : "") +
+ (order.length > 0 ? `&sort=${order.join(',')}` : '') +
+ (search ? `&query=${search}` : '') +
(functionalType.search.value
? `&functional_type=${functionalType.search.value}`
- : "") +
+ : '') +
this.hasExperimental();
try {
@@ -260,13 +263,13 @@ export default {
},
});
- if (res.statusText !== "OK") {
+ if (res.statusText !== 'OK') {
this.error = true;
this.errorMsg = `${res.status} Internal Error, please write a mail to CDCode Admin.`;
return;
}
this.error = false;
- this.errorMsg = "";
+ this.errorMsg = '';
if (res.data) {
// vm.meta = res.meta;
// vm.data = res.data;
@@ -286,7 +289,7 @@ export default {
this.error = true;
this.errorMsg =
error.response.data.error.message +
- "Internal Error, please write a mail to CDCode Admin.";
+ 'Internal Error, please write a mail to CDCode Admin.';
}
},
async downloadCsv() {
@@ -304,15 +307,15 @@ export default {
let exports = [];
let header = [
- "Name",
- "Canonical ID",
- "Biomolecular/Synthetic",
- "Species Name",
- "Species Tax Id",
- "Proteins",
+ 'Name',
+ 'Canonical ID',
+ 'Biomolecular/Synthetic',
+ 'Species Name',
+ 'Species Tax Id',
+ 'Proteins',
];
- exports.push(header.join(", "));
+ exports.push(header.join(', '));
_.forEach(data, (item) => {
let proteins = [];
@@ -324,20 +327,20 @@ export default {
[
`"${item.name}"`,
`"${item.canonical_id}"`,
- `"${item.is_experimental ? "Synthetic" : "Biomolecular"}"`,
+ `"${item.is_experimental ? 'Synthetic' : 'Biomolecular'}"`,
`"${item.species_name}"`,
item.species_tax_id,
- `"${proteins.join("\t")}"`,
- ].join(",")
+ `"${proteins.join('\t')}"`,
+ ].join(',')
);
});
- let blob = new Blob([exports.join("\n")], { type: "text/csv" });
+ let blob = new Blob([exports.join('\n')], { type: 'text/csv' });
let contentDisposition =
'Content-Disposition: attachment; filename="download-data.csv"';
- let filename = contentDisposition.split("filename=")[1];
- filename = filename.replace(/"/g, "");
+ let filename = contentDisposition.split('filename=')[1];
+ filename = filename.replace(/"/g, '');
let link = vm.$refs.download;
link.href = window.URL.createObjectURL(blob);
@@ -347,7 +350,7 @@ export default {
} catch (error) {
// console.error(error)
this.error = true;
- this.errorMsg = "You are not authorized to access this item.";
+ this.errorMsg = 'You are not authorized to access this item.';
}
},
},
diff --git a/web/src/components/LlpsTable.vue b/web/src/components/LlpsTable.vue
index 228f035..e1df06f 100644
--- a/web/src/components/LlpsTable.vue
+++ b/web/src/components/LlpsTable.vue
@@ -31,30 +31,30 @@
</template>
<script>
-import TheActionModal from "./UI/TheActionModal.vue";
-import TheDeleteModal from "./UI/TheDeleteModal.vue";
-import { apikey } from "@/components/js/const";
+import TheActionModal from './UI/TheActionModal.vue';
+import TheDeleteModal from './UI/TheDeleteModal.vue';
+import { apikey } from '@/components/js/const';
-const _ = require("lodash");
-const $ = (window.jQuery = require("jquery"));
-require("./js/clipboard");
-require("@/components/js/datatable");
+const _ = require('lodash');
+const $ = (window.jQuery = require('jquery'));
+require('./js/clipboard');
+require('@/components/js/datatable');
let table;
const scoreMap = {
- "http://llps.biocuckoo.cn/": 1,
- "http://db.phasep.pro/browse/highthroughput/": 2,
- "http://db.phasep.pro/browse/reviewed/": 4,
- "http://db.phasep.pro/browse/uniprotreviewed/": 4,
- "http://bio-comp.org.cn/llpsdb/": 4,
- "https://phasepro.elte.hu/": 4,
- "https://pubmed.ncbi.nlm.nih.gov/": 4,
- "https://cd-code.org/": 5,
+ 'http://llps.biocuckoo.cn/': 1,
+ 'http://db.phasep.pro/browse/highthroughput/': 2,
+ 'http://db.phasep.pro/browse/reviewed/': 4,
+ 'http://db.phasep.pro/browse/uniprotreviewed/': 4,
+ 'http://bio-comp.org.cn/llpsdb/': 4,
+ 'https://phasepro.elte.hu/': 4,
+ 'https://pubmed.ncbi.nlm.nih.gov/': 4,
+ 'https://cd-code.org/': 5,
};
function getStartWith(url) {
- let ret = "";
+ let ret = '';
_.forEach(_.keys(scoreMap), (i) => {
if (url.startsWith(i)) {
ret = i;
@@ -80,39 +80,39 @@ function getRating(data) {
}
}
- r.push("</div>");
+ r.push('</div>');
return r;
}
export default {
- name: "LlpsTable",
+ name: 'LlpsTable',
components: {
TheActionModal,
TheDeleteModal,
},
props: [
- "id",
- "data",
- "map",
- "pubmed",
- "dbTags",
- "isExperimental",
- "canonicalId",
- "proteinDriverCriterion",
- "proteinExperimentalEvidence",
- "proteinFunctionalType",
+ 'id',
+ 'data',
+ 'map',
+ 'pubmed',
+ 'dbTags',
+ 'isExperimental',
+ 'canonicalId',
+ 'proteinDriverCriterion',
+ 'proteinExperimentalEvidence',
+ 'proteinFunctionalType',
],
data() {
return {
toggleActionModal: false,
toggleDeleteModal: false,
- uniprotId: "",
- selectedRowData: "",
- canonicaliD: "",
+ uniprotId: '',
+ selectedRowData: '',
+ canonicaliD: '',
proteinConfidenceScore: 0,
- proteinFunctionalTypeData: "",
- proteinExperimentalEvidenceData: "",
- proteinDriverCriterionData: "",
+ proteinFunctionalTypeData: '',
+ proteinExperimentalEvidenceData: '',
+ proteinDriverCriterionData: '',
};
},
mounted() {
@@ -123,11 +123,11 @@ export default {
methods: {
closeModal() {
this.toggleActionModal = false;
- this.$emit("update-key");
+ this.$emit('update-key');
},
closeDeleteModal() {
this.toggleDeleteModal = false;
- this.$emit("update-key");
+ this.$emit('update-key');
},
fetchProtein(uniprot_id) {
const vm = this;
@@ -164,14 +164,14 @@ export default {
// console.log(item)
if (item) {
const url =
- "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=";
+ 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=';
const request = url + item;
- let $row = $("#" + item);
+ let $row = $('#' + item);
- if (!$row.attr("aria-label")) {
+ if (!$row.attr('aria-label')) {
fetch(request, {
- method: "GET",
- mode: "cors",
+ method: 'GET',
+ mode: 'cors',
headers: {},
})
.then((response) => response.json())
@@ -181,9 +181,9 @@ export default {
$(`a[id="${item}"]`).each(function () {
$(this).attr(
- "aria-label",
+ 'aria-label',
`${res.title}\n\n${_.map(res.authors, (a) => a.name).join(
- ", "
+ ', '
)}`
);
});
@@ -202,16 +202,16 @@ export default {
const columns = vm.isExperimental
? [
{
- title: "UniProt",
- data: "uniprot_id",
- className: "text-nowrap",
+ title: 'UniProt',
+ data: 'uniprot_id',
+ className: 'text-nowrap',
fnCreatedCell: (nTd, sData, oData) => {
$(nTd).html(`<a href="" class="protein-link"> ${sData} </a>`);
},
},
{
- title: "Gene Name",
- data: "gene_name",
+ title: 'Gene Name',
+ data: 'gene_name',
fnCreatedCell: (nTd, sData, oData) => {
if (sData) {
$(nTd).html(`<a href="" class="protein-link"> ${sData}</a>`);
@@ -221,9 +221,9 @@ export default {
},
},
{
- title: "Name",
- data: "name",
- className: "text-nowrap",
+ title: 'Name',
+ data: 'name',
+ className: 'text-nowrap',
fnCreatedCell: (nTd, sData, oData) => {
if (sData) {
$(nTd).html(`<a href="" class="protein-link"> ${sData}</a>`);
@@ -268,19 +268,19 @@ export default {
// }
// },
{
- title: "Pubmed *",
- data: "uniprot_id",
- className: "text-nowrap",
+ title: 'Pubmed *',
+ data: 'uniprot_id',
+ className: 'text-nowrap',
render: function (data, type, row, meta) {
if (vm.pubmed) {
let dat = vm.pubmed[row.uniprot_id];
if (dat) {
- return dat.join(", ");
+ return dat.join(', ');
} else {
- return "";
+ return '';
}
} else {
- return "";
+ return '';
}
},
fnCreatedCell: (nTd, sData, oData) => {
@@ -292,13 +292,13 @@ export default {
// $(nTd).html(data.filter(a => a.startsWith('http')).join('\n'));
// $(nTd).html(data.map(i => vm.createLink(i)).join('<br/>'));
$(nTd).html(
- data.map((i) => vm.createPubMedLink(i)).join(" ")
+ data.map((i) => vm.createPubMedLink(i)).join(' ')
);
} else {
- $(nTd).html("");
+ $(nTd).html('');
}
} else {
- $(nTd).html("");
+ $(nTd).html('');
}
},
},
@@ -388,22 +388,22 @@ export default {
// },
// }
{
- title: "Confidence Score",
- className: "text-nowrap",
- data: "uniprot_id",
+ title: 'Confidence Score',
+ className: 'text-nowrap',
+ data: 'uniprot_id',
render: function (data, type, row, meta) {
// console.log(_.flatMap(row.condensates, c => c.data_sources))
let dat = vm.map[row.uniprot_id];
if (dat) {
return dat;
}
- return "";
+ return '';
},
fnCreatedCell: (nTd, sData, oData) => {
// console.log(sData)
let data = vm.map[oData.uniprot_id];
if (data) {
- $(nTd).html(getRating(data).join("\n"));
+ $(nTd).html(getRating(data).join('\n'));
}
},
},
@@ -437,17 +437,17 @@ export default {
]
: [
{
- title: "UniProt",
- data: "uniprot_id",
- className: "whitespace-normal",
+ title: 'UniProt',
+ data: 'uniprot_id',
+ className: 'whitespace-normal',
fnCreatedCell: (nTd, sData, oData) => {
$(nTd).html(`<a href="" class="protein-link"> ${sData} </a>`);
},
},
{
- title: "Gene Name",
- data: "gene_name",
- className: "whitespace-normal break-words",
+ title: 'Gene Name',
+ data: 'gene_name',
+ className: 'whitespace-normal break-words',
fnCreatedCell: (nTd, sData, oData) => {
if (sData) {
$(nTd).html(`<a href="" class="protein-link"> ${sData}</a>`);
@@ -457,9 +457,9 @@ export default {
},
},
{
- title: "Name",
- data: "name",
- className: "whitespace-normal break-words",
+ title: 'Name',
+ data: 'name',
+ className: 'whitespace-normal break-words',
fnCreatedCell: (nTd, sData, oData) => {
if (sData) {
$(nTd).html(`<a href="" class="protein-link"> ${sData}</a>`);
@@ -491,20 +491,20 @@ export default {
'Pubmed <a class="uniprot-link tooltipped tooltipped-e tooltipped-multiline"\n' +
' aria-label="Publications providing evidence for protein being a component in this condensate"><span class="fa fa-info-circle" /></a>',
tooltip:
- "Publications providing evidence for protein being a component in this condensate",
- data: "uniprot_id",
- className: "whitespace-normal break-words",
+ 'Publications providing evidence for protein being a component in this condensate',
+ data: 'uniprot_id',
+ className: 'whitespace-normal break-words',
render: function (data, type, row, meta) {
if (vm.pubmed) {
let dat = vm.pubmed[row.uniprot_id];
if (dat) {
- return dat.join(", ");
+ return dat.join(', ');
} else {
- return "";
+ return '';
}
} else {
- return "";
+ return '';
}
},
fnCreatedCell: (nTd, sData, oData) => {
@@ -515,20 +515,20 @@ export default {
// $(nTd).html(data.filter(a => a.startsWith('http')).join('\n'));
// $(nTd).html(data.map(i => vm.createLink(i)).join('<br/>'));
$(nTd).html(
- data.map((i) => vm.createPubMedLink(i)).join(" ")
+ data.map((i) => vm.createPubMedLink(i)).join(' ')
);
} else {
- $(nTd).html("");
+ $(nTd).html('');
}
} else {
- $(nTd).html("");
+ $(nTd).html('');
}
},
},
{
- title: "Functional Type",
- data: "protein_functional_type",
- className: "whitespace-normal break-words",
+ title: 'Functional Type',
+ data: 'protein_functional_type',
+ className: 'whitespace-normal break-words',
render: function (data, type, row, meta) {
// console.log(_.flatMap(row.condensates, c => c.data_sources))
@@ -539,15 +539,15 @@ export default {
if (dat) {
return _.startCase(dat);
} else {
- return "";
+ return '';
}
},
},
{
- title: "Experimental Evidence",
- data: "protein_exp_evidence",
- defaultContent: "",
- className: "whitespace-normal break-words",
+ title: 'Experimental Evidence',
+ data: 'protein_exp_evidence',
+ defaultContent: '',
+ className: 'whitespace-normal break-words',
render: function (data, type, row, meta) {
// console.log(_.flatMap(row.condensates, c => c.data_sources))
@@ -558,18 +558,18 @@ export default {
if (dat) {
const val = dat.map((i) =>
- i === "frap" ? (dat[i] = i.toUpperCase()) : _.startCase(i)
+ i === 'frap' ? (dat[i] = i.toUpperCase()) : _.startCase(i)
);
- return val.join(", ");
+ return val.join(', ');
}
- return "";
+ return '';
},
},
{
- title: "Driver Criterion",
- data: "driver_criterion",
- className: "whitespace-normal break-words",
+ title: 'Driver Criterion',
+ data: 'driver_criterion',
+ className: 'whitespace-normal break-words',
render: function (data, type, row, meta) {
// console.log(_.flatMap(row.condensates, c => c.data_sources))
@@ -579,12 +579,12 @@ export default {
let dat = vm.proteinDriverCriterion[row.uniprot_id];
if (dat) {
const val = dat.map((i) =>
- i === "self_ps" ? (dat[i] = "Self-PS") : _.startCase(i)
+ i === 'self_ps' ? (dat[i] = 'Self-PS') : _.startCase(i)
);
- return val.join(", ");
+ return val.join(', ');
}
- return "";
+ return '';
},
},
// {
@@ -618,10 +618,10 @@ export default {
// },
// }
{
- title: "Confidence Score",
- className: "whitespace-nowrap",
- data: "uniprot_id",
- name: "confidenceScore",
+ title: 'Confidence Score',
+ className: 'whitespace-nowrap',
+ data: 'uniprot_id',
+ name: 'confidenceScore',
render: function (data, type, row, meta) {
// console.log(_.flatMap(row.condensates, c => c.data_sources))
let dat = vm.map[row.uniprot_id];
@@ -629,20 +629,20 @@ export default {
// console.log(getRatingValue(vm.map[row.uniprot_id]))
return dat;
}
- return "";
+ return '';
},
fnCreatedCell: (nTd, sData, oData) => {
let data = vm.map[oData.uniprot_id];
if (data) {
- $(nTd).html(getRating(data).join("\n"));
+ $(nTd).html(getRating(data).join('\n'));
}
},
},
{
- title: "Action",
- data: "uniprot_id",
- name: "action",
- className: "text-nowrap",
+ title: 'Action',
+ data: 'uniprot_id',
+ name: 'action',
+ className: 'text-nowrap',
fnCreatedCell: (nTd, sData, oData) => {
$(nTd).html(
`<button class="rounded-md bg-transparent hover:bg-blue-500 text-blue-700
@@ -692,7 +692,7 @@ export default {
// aaSorting: [[ 0, 'asc' ]],
lengthMenu: [
[10, 25, 50, -1],
- [10, 25, 50, "All"],
+ [10, 25, 50, 'All'],
],
paging: true,
searching: true,
@@ -701,7 +701,7 @@ export default {
order: [], // order: [[0, 'asc']],
bDestroy: true, // Add this property to new setting,
oLanguage: {
- sSearch: "Filter",
+ sSearch: 'Filter',
},
dom: '<"row"<"col-sm-2"l><"col-sm-2"f><"col-sm-6"p><"#download.col-sm-2">><"row"t><"row"<"col-sm-4"i><"col-sm-8"p>>',
initComplete: function () {
@@ -743,22 +743,22 @@ export default {
table = $(tableId).DataTable(nTableOptions);
- $("#download").html(
+ $('#download').html(
'<div style="text-align: right;"><div class="dropdown">\n' +
' <button class="btn download-link" type="button" id="dropdownMenuButton">\n' +
- " Download CSV\n" +
- " </button>\n" +
- "</div></div>"
+ ' Download CSV\n' +
+ ' </button>\n' +
+ '</div></div>'
);
if (
- !this.$store.getters["User/userRole"] ||
- this.$store.getters["User/userRole"] === "Administrator" ||
- this.$store.getters["User/userRole"] === "Authenticated"
+ !this.$store.getters['User/userRole'] ||
+ this.$store.getters['User/userRole'] === 'Administrator' ||
+ this.$store.getters['User/userRole'] === 'Authenticated'
) {
var colIndex;
table.columns().every(function () {
- colIndex = table.column("action:name").index();
+ colIndex = table.column('action:name').index();
// ... do something with data(), or this.nodes(), etc
});
@@ -767,20 +767,20 @@ export default {
const tableBody = `${tableId} tbody`;
- $(tableBody).on("click", "tr td a.protein-link", (e) => {
+ $(tableBody).on('click', 'tr td a.protein-link', (e) => {
e.preventDefault();
const tr = $(e.target).parent().parent();
const row = table.row(tr);
vm.fetchProtein(row.data().uniprot_id);
});
- $(tableBody).on("click", "tr td a.uniprot-link", (e) => {
+ $(tableBody).on('click', 'tr td a.uniprot-link', (e) => {
e.preventDefault();
const tr = $(e.target).parent().parent();
const row = table.row(tr);
vm.forwardUniprot(row.data().uniprot_id);
});
- $(tableBody).on("click", "tr td button.edit-link", (e) => {
+ $(tableBody).on('click', 'tr td button.edit-link', (e) => {
e.preventDefault();
const tr = $(e.target).parent().parent();
@@ -824,7 +824,7 @@ export default {
// vm.$router.push(`/protein/editDetails/${id}`);
// vm.fetchPubMedId(e.target.id);
});
- $(tableBody).on("click", "tr td button.delete-link", (e) => {
+ $(tableBody).on('click', 'tr td button.delete-link', (e) => {
e.preventDefault();
const tr = $(e.target).parent().parent();
@@ -836,12 +836,12 @@ export default {
// vm.$router.push(`/protein/editDetails/${id}`);
// vm.fetchPubMedId(e.target.id);
});
- $(tableBody).on("mouseover", "tr td a.pubmed-link", (e) => {
+ $(tableBody).on('mouseover', 'tr td a.pubmed-link', (e) => {
e.preventDefault();
// console.log(e.target.id)
vm.fetchPubMedId(e.target.id);
});
- $("#download").on("click", (e) => {
+ $('#download').on('click', (e) => {
e.preventDefault();
vm.downloadCsv();
});
@@ -854,18 +854,18 @@ export default {
let exports = [];
let header = [
- "UniProt",
- "Gene Name",
- "Name",
- "Pubmed",
- "Functional Type",
- "Experimental Evidence",
- "Driver Criterion",
- "DB",
- "Confidence Score",
+ 'UniProt',
+ 'Gene Name',
+ 'Name',
+ 'Pubmed',
+ 'Functional Type',
+ 'Experimental Evidence',
+ 'Driver Criterion',
+ 'DB',
+ 'Confidence Score',
];
- exports.push(header.join(", "));
+ exports.push(header.join(', '));
_.forEach(data, (item) => {
let pubMedIds = [];
@@ -907,7 +907,7 @@ export default {
let dbTags;
if (vm.dbTags) {
let dat = vm.dbTags[id];
- dbTags = dat.join("\t");
+ dbTags = dat.join('\t');
}
exports.push(
@@ -915,22 +915,22 @@ export default {
`"${item.uniprot_id}"`,
`"${item.gene_name}"`,
`"${item.name}"`,
- `"${pubMedIds.join("\t")}"`,
+ `"${pubMedIds.join('\t')}"`,
findProteinFunctionalType,
proteinExpEvi,
proteinDriCri,
dbTags,
findScore,
- ].join(",")
+ ].join(',')
);
});
- let blob = new Blob([exports.join("\n")], { type: "text/csv" });
+ let blob = new Blob([exports.join('\n')], { type: 'text/csv' });
let contentDisposition =
'Content-Disposition: attachment; filename="download-data.csv"';
- let filename = contentDisposition.split("filename=")[1];
- filename = filename.replace(/"/g, "");
+ let filename = contentDisposition.split('filename=')[1];
+ filename = filename.replace(/"/g, '');
let link = vm.$refs.download;
link.href = window.URL.createObjectURL(blob);
diff --git a/web/src/components/Team/TheTeamList.vue b/web/src/components/Team/TheTeamList.vue
index e093d18..b041337 100644
--- a/web/src/components/Team/TheTeamList.vue
+++ b/web/src/components/Team/TheTeamList.vue
@@ -48,7 +48,7 @@
"
:src="items.img"
alt="profile image"
- />
+ >
</a>
</div>
<div class="my-2 inline-block font-medium text-center">
@@ -66,61 +66,61 @@ export default {
teamMembers: [
{
id: 1,
- name: "Agnes Toth-Petroczy",
- img: require("../../assets/teams/agnes.jpeg"),
+ name: 'Agnes Toth-Petroczy',
+ img: require('../../assets/teams/agnes.jpeg'),
profileLink:
- "https://www.mpi-cbg.de/research/researchgroups/currentgroups/agnes-toth-petroczy/research-focus",
+ 'https://www.mpi-cbg.de/research/researchgroups/currentgroups/agnes-toth-petroczy/research-focus',
},
{
id: 2,
- name: "Nadia Rostam",
- img: require("../../assets/teams/Nadia.png"),
- profileLink: "https://de.linkedin.com/in/nadia-rostam-2657bb122/",
+ name: 'Nadia Rostam',
+ img: require('../../assets/teams/Nadia.png'),
+ profileLink: 'https://de.linkedin.com/in/nadia-rostam-2657bb122/',
},
{
id: 3,
- name: "Soumyadeep Ghosh",
- img: require("../../assets/teams/deep.jpeg"),
- profileLink: "https://www.linkedin.com/in/soumyadeep11194/",
+ name: 'Soumyadeep Ghosh',
+ img: require('../../assets/teams/deep.jpeg'),
+ profileLink: 'https://www.linkedin.com/in/soumyadeep11194/',
},
{
id: 4,
- name: "Chi Fung Willis Chow",
- img: require("../../assets/teams/willies.jpeg"),
- profileLink: "https://www.linkedin.com/in/chi-fung-chow-4a365314b/",
+ name: 'Chi Fung Willis Chow',
+ img: require('../../assets/teams/willies.jpeg'),
+ profileLink: 'https://www.linkedin.com/in/chi-fung-chow-4a365314b/',
},
{
id: 5,
- name: "Anna Hadarovich",
- img: require("../../assets/teams/anna.png"),
- profileLink: "https://www.linkedin.com/in/anna-hadarovich/",
+ name: 'Anna Hadarovich',
+ img: require('../../assets/teams/anna.png'),
+ profileLink: 'https://www.linkedin.com/in/anna-hadarovich/',
},
{
id: 7,
- name: "Rajat Ghosh",
- img: require("../../assets/teams/rajat.jpg"),
- profileLink: "https://www.linkedin.com/in/rajat-ghosh-9a535096/",
+ name: 'Rajat Ghosh',
+ img: require('../../assets/teams/rajat.jpg'),
+ profileLink: 'https://www.linkedin.com/in/rajat-ghosh-9a535096/',
},
{
id: 8,
- name: "HongKee Moon",
- img: require("../../assets/teams/HK.jpeg"),
- profileLink: "https://www.linkedin.com/in/moony/",
+ name: 'HongKee Moon',
+ img: require('../../assets/teams/HK.jpeg'),
+ profileLink: 'https://www.linkedin.com/in/moony/',
},
{
id: 9,
- name: "Lena Hersemann",
- img: require("../../assets/teams/lenna.png"),
- profileLink: "https://de.linkedin.com/in/lenahersemann",
+ name: 'Lena Hersemann',
+ img: require('../../assets/teams/lenna.png'),
+ profileLink: 'https://de.linkedin.com/in/lenahersemann',
},
{
id: 10,
- name: "Anthony Hyman",
- img: require("../../assets/teams/Hyman.jpeg"),
- profileLink: "https://hymanlab.org/hyman_lab/",
+ name: 'Anthony Hyman',
+ img: require('../../assets/teams/Hyman.jpeg'),
+ profileLink: 'https://hymanlab.org/hyman_lab/',
},
],
};
diff --git a/web/src/views/Profile.vue b/web/src/views/Profile.vue
index 536b832..ede5e8c 100644
--- a/web/src/views/Profile.vue
+++ b/web/src/views/Profile.vue
@@ -14,7 +14,7 @@
size="lg"
/>
- <h4>{{toasterMessage}}</h4>
+ <h4>{{ toasterMessage }}</h4>
<button
class="btn btn-outline"
@click="hideDialog"
@@ -452,7 +452,10 @@
</template>
</fetch-profile>
- <fetch-users v-if="getRole === 'Administrator'" :key="'users-' + updatedUsersKey">
+ <fetch-users
+ v-if="getRole === 'Administrator'"
+ :key="'users-' + updatedUsersKey"
+ >
<template slot-scope="{ response, loading }">
<slot
:response="response"
--
GitLab