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pCMALib: a parallel FORTRAN 90 library for CMA-ES

Exact stochastic simulation of intracellular transport

Region Competition algorithm implemented as an ITK filter (C++).

MSS trajectory analysis

Implementation of the fast curvature filters for images.

pSSAlib: Stochastic chemical network and reaction-diffusion simulation

Geometric computation benchmarks with classic numerical schemes for comparison with Global Polynomial Level Set method.

Brownian dynamics simulation of cross-linked filament bundles

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

Library for producing and processing on the Adaptive Particle Representation (APR)

openfpm_pdata

PPM client for diffusion on curved surfaces