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pSSAlib: Stochastic chemical network and reaction-diffusion simulation

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

Region Competition algorithm implemented as an ITK filter (C++).

real-time in-situ visualization of distributed numerical simulations

Exact stochastic simulation of intracellular transport