Explore projects

Repository containing the scripts used in Iglesias-Artola et al 2024. Quantitative imaging of species-specific lipid transport in mammalian cells

Sequencing analysis pipeline for our paper "Human liver cholangiocyte organoids capture the heterogeneity of in vivo liver ductal epithelium"

Repository of Code used in the Bachelor Thesis "Guanine crystal segmentation and classification imaged in the eye of zebrafish embryos"

This repository is all about simulating flow driven pruning in biological flow networks.

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Improving contrast in confocal data by degrading image with model of light scattering

Exploring cellpose (deep learning) for segmentation in 2D&3D. Including setup for GPU on cluster or workstation