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Theory analysis and code for studying Drosophila wing disc eversion

Implementation of 2D unet. Use as base for user projects.

private repo with testing jupyter notebooks

This repository contains source codes and notebook demos for trainin STENCIL-NET.

Similarity/Homology Assessment by Relating K-mers

Sequencing analysis pipeline for our paper "Human assembloids recapitulate periportal liver tissue in vitro"

This software package implements the identification of robust topological defects.

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

Supplementary Jupyter notebook to our article "Lgr5+ stem/progenitor cells reside at the apex of the embryonic hepatoblast pool"

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

PDE inference from limited spatio-temporal data