Explore projects

Theory analysis and code for studying Drosophila wing disc eversion

repo to contain example notebooks to run DeepContrast

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

New analyses for the "Navigating Uncertainty in Encoded Decision-Space" project. Analysis for both "Fruit Task" and "Hexagons Task."

Similarity/Homology Assessment by Relating K-mers

Geometric computation benchmarks with classic numerical schemes for comparison with Global Polynomial Level Set method.

Jenkins pipelines

This software package implements the identification of robust topological defects.

Improving contrast in confocal data by degrading image with model of light scattering

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Basic code to perform inPhase, a method to determine dilute and condensed phase concentrations of protein condensates.