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Similarity/Homology Assessment by Relating K-mers

Web frontend (VueJs) and CMS (Strapi)

Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"

Documentations for CD-CODE project

Library implementing TIGHT-CUT heuristic for solving FASP (Feedback Arc Set Problem)

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Backend APIs (Flask) exposing data from database in RESTful format

openfpm_pdata

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

A collection of tools to process and manipulate high-throughput sequencing data

This is a code-repository for the image-, sequencing and data-analysis performed for the manuscript: Integrated Molecular-Phenotypic Profiling Reveals Tuneable Modulators of Morphological Variation in Stembryos" authored by: Alba Villaronga Luque et al.

this repository contains Fiji scripts associated with the paper : Stefan et al., Quantitative analysis of native lipid dynamics and lipid protein interactions in living cells

Complementary information concerning the article "Mutations in the Drosophila splicing regulator Prp31 as a model for Retinitis pigmentosa 11"

Library for producing and processing on the Adaptive Particle Representation (APR)

Complementary information concerning the article: "A 3D system to model human pancreas development and its reference single cell transcriptome atlas reveal signaling pathways required for progenitor expansion"

Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021

useful functionality for image-, data-analysis and classification of stembryos

Basic code to perform inPhase, a method to determine dilute and condensed phase concentrations of protein condensates.