Update README.md

README.md

@@ -2,6 +2,11 @@
 
 by Stephan Janosch, janosch@mpi-cbg.de, https://orcid.org/0000-0002-2401-6862
 
+First you run ***stich_a_day*** on a folder with daily recordings. This takes a while.
+
+Second you run fix filenames somewhere in output folder. This fixes the filename (which takes a long time) and generates quickview jpgs.
+
+
 ## stitch_a_day
 
 2 macros for stitching:
@@ -10,6 +15,8 @@ by Stephan Janosch, janosch@mpi-cbg.de, https://orcid.org/0000-0002-2401-6862
 
 Indicate files for stitiching via ***_stitch_*** or any other substring
 
+1 macro for just doing a fusion for all xmls in a daily recording folder. 
+
 ### MacOs
 
 A directory naming convention like this works
@@ -25,4 +32,8 @@ TRG_1678_@16C_stitch_0.tif		TRG_1678_@28C_stitch_0.tif
 
 ### Windows
 
-map network drive. Have the days folders in the root of the drive
\ No newline at end of file
+map network drive. Have the days folders in the root of the drive
+
+```
+Z:\2018-09-18 SD1 Andre\TRG_1678\
+```
\ No newline at end of file