diff --git a/README.md b/README.md new file mode 100644 index 0000000000000000000000000000000000000000..24f13b4d4c29e24ef058083a04dc9a8a912391ff --- /dev/null +++ b/README.md @@ -0,0 +1,28 @@ +# Macro Collection for BigStitcher Automation + +by Stephan Janosch, janosch@mpi-cbg.de, https://orcid.org/0000-0002-2401-6862 + +## stitch_a_day + +2 macros for stitching: +- a directory hierarchie full of +- tifs, each containing multiple channels and tiles + +Indicate files for stitiching via ***_stitch_*** or any other substring + +### MacOs + +A directory naming convention like this works +``` +/Volumes/SarovHFSP/2018-09-18 SD1 Andre/TRG_1678/ +``` + +``` +TRG_1678_16C_to_25C_TimelapseZ_0.tif TRG_1678_@16C_stitch_1.tif +TRG_1678_16C_to_25C_timelapseZ_1.tif TRG_1678_@16C_stitch_2.tif +TRG_1678_@16C_stitch_0.tif TRG_1678_@28C_stitch_0.tif +``` + +### Windows + +map network drive. Have the days folders in the root of the drive \ No newline at end of file