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# Macro Collection for BigStitcher Automation

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by Stephan Janosch, janosch@mpi-cbg.de, https://orcid.org/0000-0002-2401-6862

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## stitch_a_day

2 macros for stitching:
- a directory hierarchie full of
- tifs, each containing multiple channels and tiles
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Indicate files for stitiching via ***_stitch_*** or any other substring

### MacOs

A directory naming convention like this works
```
/Volumes/SarovHFSP/2018-09-18 SD1 Andre/TRG_1678/
```

```
TRG_1678_16C_to_25C_TimelapseZ_0.tif	TRG_1678_@16C_stitch_1.tif
TRG_1678_16C_to_25C_timelapseZ_1.tif	TRG_1678_@16C_stitch_2.tif
TRG_1678_@16C_stitch_0.tif		TRG_1678_@28C_stitch_0.tif
```

### Windows

map network drive. Have the days folders in the root of the drive