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bioinfo
Issues

Open 16
Closed 94
All 110

Priority Created date Last updated Milestone due date Due date Popularity Label priority Manual Title

gsea: improvments 2 of 4 tasks completed

ngs_tools#97 · created Sep 24, 2020 by domingue rna_seq
- 0
updated Oct 13, 2020
Stranded counts

ngs_tools#88 · created Mar 27, 2020 by domingue rna_seq
- 5
updated Jul 13, 2020
ms_workflow: improve the results heatmap 2 of 3 tasks completed

ngs_tools#66 · created Aug 15, 2019 by domingue mass_spec
- 1
updated Aug 23, 2019
Deprecation of biocLite from R > 3.5.0

datautils#4 · created Jul 08, 2019 by domingue
- 1
updated Jul 11, 2019
dge workflow: add GTF an argument for differential gene expression

ngs_tools#57 · created Jun 20, 2019 by domingue rna_seq
- 2
updated Jun 28, 2019
dge_workflow: report number of reads per gene

ngs_tools#51 · created May 31, 2019 by herseman
- 14
updated Jun 30, 2020
general: create templates for R scripts and shinyApps and revise the dge_star_template

ngs_tools#50 · created May 10, 2019 by herseman
- 1
updated May 14, 2019
ms_workflow: move to peptide level

ngs_tools#45 · created Mar 07, 2019 by herseman
- 0
updated Dec 10, 2019
ms_workflow: handling of technical replicates

ngs_tools#40 · created Feb 13, 2019 by herseman mass_spec
- 2
updated Dec 09, 2019
general: create customized docker files for individual analyses done with our ngs_tools scripts

ngs_tools#39 · created Feb 11, 2019 by herseman
- 3
updated Mar 14, 2019
sc_workflow: write single script for Seurat workflow with tested and approved settings

ngs_tools#35 · created Jan 16, 2019 by herseman
- 3
updated Mar 22, 2019
ms_workflow: aggregate protein isoforms data on gene level

ngs_tools#32 · created Jan 15, 2019 by herseman mass_spec
- 0
updated Feb 08, 2019
ms_workflow: report number of peptides (unique and razor peptides) for each protein group

ngs_tools#31 · created Jan 15, 2019 by herseman mass_spec
- 2
updated Feb 08, 2019
DESeq2 check current clustering method

ngs_tools#24 · created Nov 15, 2017 by herseman
- 0
updated Nov 29, 2018
run kallisto parallel to STAR

ngs_tools#21 · created Nov 09, 2017 by herseman
- 0
updated Nov 09, 2017
report proportion of multi-mappers in STAR report

ngs_tools#20 · created Nov 09, 2017 by herseman
- 0
updated Nov 16, 2017