diff --git a/Plots_Droplet_FRAP.ipynb b/Plots_Droplet_FRAP.ipynb index a325c4cb4889dfab47f76e09651f9fc337a0c8d4..c09a66792e880b44a93e8ee994e5c71b0fd4630d 100644 --- a/Plots_Droplet_FRAP.ipynb +++ b/Plots_Droplet_FRAP.ipynb @@ -1,12 +1,5 @@ { "cells": [ - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "### FRAP geometries" - ] - }, { "cell_type": "code", "execution_count": null, @@ -22,11 +15,26 @@ "import pandas as pd\n", "import seaborn as sns\n", "fol = '/Users/hubatsch/Desktop/DropletFRAP/Latex/Figures/'\n", - "sns.set_style(\"ticks\")\n", + "# sns.set_style(\"ticks\")\n", "rcParams['axes.linewidth'] = 0.75\n", "rcParams['xtick.major.width'] = 0.75\n", "rcParams['ytick.major.width'] = 0.75\n", - "rcParams['text.usetex']=True" + "# rcParams['text.usetex']=True" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Define colors\n", + "sns.set_palette(sns.color_palette(\"Set2\"))\n", + "grey = (0.6, 0.6, 0.6)\n", + "dark_grey = (0.2, 0.2, 0.2)\n", + "green = pa[0]\n", + "blue = pa[2]\n", + "red = pa[1]" ] }, { @@ -55,6 +63,25 @@ " transparent=True)" ] }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### FRAP geometries" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# For radial average: define angles and radial spacing\n", + "alphas = np.linspace(0,2*np.pi, 20)\n", + "ns = np.c_[np.cos(alphas), np.sin(alphas), np.zeros(len(alphas))]\n", + "eps = np.linspace(0, 0.23, 100)" + ] + }, { "cell_type": "code", "execution_count": null, @@ -91,9 +118,6 @@ "metadata": {}, "outputs": [], "source": [ - "alphas = np.linspace(0,2*np.pi, 20)\n", - "ns = np.c_[np.cos(alphas), np.sin(alphas), np.zeros(len(alphas))]\n", - "eps = np.linspace(0, 0.23, 100)\n", "profs = []\n", "for i in range(len(f_i)):\n", "# if i>2:\n", @@ -150,7 +174,7 @@ "plt.plot([np.mean(x)/f_i[2].phi_tot_int for x in profs[2]],\n", " lw=2, label='d=1.5', ls=':')\n", "plt.plot(range(0, 100), np.ones(100), linestyle='--', color='k')\n", - "plt.title('$\\Phi_{out}=0.01}$', size=12)\n", + "plt.title('$P=99}$', size=12)\n", "plt.gca().get_yaxis().set_visible(False)\n", "save_nice_fig(fol+'Fig3/tot_recov_neighbours_bad.pdf')" ] @@ -169,7 +193,7 @@ "plt.plot([np.mean(x)/f_i[5].phi_tot_int for x in profs[5]],\n", " lw=2, label='d=1.5', ls=':')\n", "plt.plot(range(0, 100), np.ones(100), linestyle='--', color='k')\n", - "plt.title('$\\Phi_{out}=0.1}$', size=12)\n", + "# plt.title('$P=9$', size=12)\n", "plt.legend(prop={'size': 9}, frameon=False)\n", "save_nice_fig(fol+'Fig3/tot_recov_neighbours_good.pdf')" ] @@ -255,7 +279,7 @@ " plt.plot([np.mean(x)/f.phi_tot_int for x in profs_cs[i]],\n", " label='d='+str(z[i]), ls=ls[i], lw=2)\n", "plt.plot(range(0, 100), np.ones(100), linestyle='--', color='k')\n", - "plt.title('$\\Phi_{out}=0.01}$', size=12)\n", + "plt.title('$P=99$', size=12)\n", "plt.gca().get_yaxis().set_visible(False)\n", "save_nice_fig(fol+'Fig3/tot_recov_cs_bad.pdf')" ] @@ -272,7 +296,7 @@ " plt.plot([np.mean(x)/f.phi_tot_int for x in profs_cs[i+3]],\n", " label='h='+str(z[i]), lw=2, ls=ls[i])\n", "plt.plot(range(0, 100), np.ones(100), linestyle='--', color='k')\n", - "plt.title('$\\Phi_{out}=0.1}$', size=12)\n", + "plt.title('$P=9$', size=12)\n", "plt.legend(prop={'size': 9}, frameon=False)\n", "save_nice_fig(fol+'Fig3/tot_recov_cs_good.pdf')" ]