Tutorial.md

@@ -14,8 +14,11 @@ Startup Screen for [Reorder Scans](Reorder-Scans)
 You can also start **reorder scans** without selecting a file or running PeakStrainer
 ![Capture1](/uploads/3c5b2b60148c1af927a578fa07e4ad6a/Capture1.PNG)
 
-Choose output options
+Choose "other" output options
 ----------
+You can get the intermediate files that show how the data was processed by selecting the CSV output, if the output directory is empty the files will be created in the same directory as the selected files. 
+
+You can also set the logging, to show any issues relevant information, the log file is useful to fix bugs in the program, a high log level means that most if not all messages are stored, alternately a low log level indicates 
 ![Capture3](/uploads/f4c5648c3d6ca2c4e3215487a617c848/Capture3.PNG)
 
 2Startup Screen for [Reorder Scans](Reorder-Scans)