diff --git a/doc/source/changelog.rst b/doc/source/changelog.rst index 3fe83ddfd094d36cd36d89a0ffac3401d6a820bf..5694979753c44e8107ba735ab30eb47c516ac8f2 100644 --- a/doc/source/changelog.rst +++ b/doc/source/changelog.rst @@ -2,6 +2,9 @@ Changelog ================ +* 1.0.20 + - ParticleTracker plugin now can use GPU acceleartion provided by CLIJ2 + * 1.0.19 - Discrete region sampling (DRS) is finally available in official release diff --git a/doc/source/conf.py b/doc/source/conf.py index 8acbed876fe1b0734b9d2ead3298e32ab75380d7..cacd44a4967b84464af6d2785946316d9947afe5 100644 --- a/doc/source/conf.py +++ b/doc/source/conf.py @@ -22,7 +22,7 @@ copyright = '2020, MOSAIC Group, Sbalzarini Lab, mosaic.mpi-cbg.de' author = 'MOSAIC Group, Sbalzarini Lab' # The full version, including alpha/beta/rc tags -release = '1.0.19' +release = '1.0.20' # -- General configuration --------------------------------------------------- diff --git a/doc/source/particleTrackerTutorial.rst b/doc/source/particleTrackerTutorial.rst index 126edf5bab88f29309daa654c9444888074b0a46..300685b9b4d8ba84824420beddb1f90cceb2c20c 100644 --- a/doc/source/particleTrackerTutorial.rst +++ b/doc/source/particleTrackerTutorial.rst @@ -48,6 +48,7 @@ The dialog showing now has 2 parts: Particle Detection and Particle Linking. The parameters relevant for detection are: * **Radius**: Approximate radius of the particles in the images in units of pixels. The value should be slightly larger than the visible particle radius, but smaller than the smallest inter-particle separation. +* **Accelerate with CLIJ2 (experimental)**: Use CLIJ2 to utilize GPU for detection of particles. Especially good for large radius (>10) setting. IMPORTANT: This option is visible only when CLIJ2 is installed (enable 'clij' and 'clij2' in update sites of your Fiji to download and install it). * **Cutoff**: The score cut-off for the non-particle discrimination * **Per/Abs**: The percentile (r) (or absolute intensity value) that determines which bright pixels are accepted as Particles. All local maxima in the upper rth percentile of the image intensity distribution ( or absolute intensity value ) are considered candidate Particles. Unit: percent (%) (or absolute intensity value) * **Absolute**: when enable it read the Per/Abs parameter as absolute intensity value diff --git a/pom.xml b/pom.xml index 7255e903c0050217c911905cdb7a59f627f45809..952beaa7af72ddfc4636f7a9ce8509941d7e1a1c 100644 --- a/pom.xml +++ b/pom.xml @@ -7,7 +7,7 @@ <groupId>mosaic</groupId> <artifactId>MosaicSuite</artifactId> <packaging>jar</packaging> - <version>1.0.19</version> + <version>1.0.20</version> <description>Package contains image processing algorithms developed in MOSAIC Group</description> <url>http://mosaic.mpi-cbg.de/?q=downloads/imageJ</url> <inceptionYear>2010</inceptionYear>