From 18ed80bc2de278b5edd0f0dfa23ef1628a6baef3 Mon Sep 17 00:00:00 2001
From: Krzysztof Gonciarz <gonciarz@mpi-cbg.de>
Date: Mon, 19 Oct 2020 15:33:39 +0200
Subject: [PATCH] Version 1.0.20
---
doc/source/changelog.rst | 3 +++
doc/source/conf.py | 2 +-
doc/source/particleTrackerTutorial.rst | 1 +
pom.xml | 2 +-
4 files changed, 6 insertions(+), 2 deletions(-)
diff --git a/doc/source/changelog.rst b/doc/source/changelog.rst
index 3fe83ddf..56949797 100644
--- a/doc/source/changelog.rst
+++ b/doc/source/changelog.rst
@@ -2,6 +2,9 @@
Changelog
================
+* 1.0.20
+ - ParticleTracker plugin now can use GPU acceleartion provided by CLIJ2
+
* 1.0.19
- Discrete region sampling (DRS) is finally available in official release
diff --git a/doc/source/conf.py b/doc/source/conf.py
index 8acbed87..cacd44a4 100644
--- a/doc/source/conf.py
+++ b/doc/source/conf.py
@@ -22,7 +22,7 @@ copyright = '2020, MOSAIC Group, Sbalzarini Lab, mosaic.mpi-cbg.de'
author = 'MOSAIC Group, Sbalzarini Lab'
# The full version, including alpha/beta/rc tags
-release = '1.0.19'
+release = '1.0.20'
# -- General configuration ---------------------------------------------------
diff --git a/doc/source/particleTrackerTutorial.rst b/doc/source/particleTrackerTutorial.rst
index 126edf5b..300685b9 100644
--- a/doc/source/particleTrackerTutorial.rst
+++ b/doc/source/particleTrackerTutorial.rst
@@ -48,6 +48,7 @@ The dialog showing now has 2 parts: Particle Detection and Particle Linking.
The parameters relevant for detection are:
* **Radius**: Approximate radius of the particles in the images in units of pixels. The value should be slightly larger than the visible particle radius, but smaller than the smallest inter-particle separation.
+* **Accelerate with CLIJ2 (experimental)**: Use CLIJ2 to utilize GPU for detection of particles. Especially good for large radius (>10) setting. IMPORTANT: This option is visible only when CLIJ2 is installed (enable 'clij' and 'clij2' in update sites of your Fiji to download and install it).
* **Cutoff**: The score cut-off for the non-particle discrimination
* **Per/Abs**: The percentile (r) (or absolute intensity value) that determines which bright pixels are accepted as Particles. All local maxima in the upper rth percentile of the image intensity distribution ( or absolute intensity value ) are considered candidate Particles. Unit: percent (%) (or absolute intensity value)
* **Absolute**: when enable it read the Per/Abs parameter as absolute intensity value
diff --git a/pom.xml b/pom.xml
index 7255e903..952beaa7 100644
--- a/pom.xml
+++ b/pom.xml
@@ -7,7 +7,7 @@
<groupId>mosaic</groupId>
<artifactId>MosaicSuite</artifactId>
<packaging>jar</packaging>
- <version>1.0.19</version>
+ <version>1.0.20</version>
<description>Package contains image processing algorithms developed in MOSAIC Group</description>
<url>http://mosaic.mpi-cbg.de/?q=downloads/imageJ</url>
<inceptionYear>2010</inceptionYear>
--
GitLab