From 057c9feb2859edb2e0f82a3cad68bec64754dae9 Mon Sep 17 00:00:00 2001
From: Pietro Incardona <incardon@mpi-cbg.de>
Date: Sun, 3 Mar 2019 23:17:15 +0100
Subject: [PATCH] Adding test for MetaParser
---
src/CMakeLists.txt | 10 +-
src/MetaParser/MetaParser.hpp | 84 ++++
src/MetaParser/MetaParser_unit_test.cpp | 117 ++++++
src/VTKWriter/VTKWriter_point_set.hpp | 35 ++
src/VTKWriter/VTKWriter_unit_tests.hpp | 24 +-
test_data/vtk_points_pp_header_test.vtk | 515 ++++++++++++++++++++++++
6 files changed, 779 insertions(+), 6 deletions(-)
create mode 100644 src/MetaParser/MetaParser.hpp
create mode 100644 src/MetaParser/MetaParser_unit_test.cpp
create mode 100644 test_data/vtk_points_pp_header_test.vtk
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index f85338b6..b1c34e80 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -2,7 +2,15 @@ cmake_minimum_required(VERSION 3.8 FATAL_ERROR)
########################### Executables
-add_executable(io main.cpp HDF5_wr/HDF5_writer_cuda.cu ObjReader/ObjReader_unit_test.cpp ../../openfpm_vcluster/src/VCluster/VCluster.cpp ../../openfpm_devices/src/memory/CudaMemory.cu ../../openfpm_devices/src/memory/HeapMemory.cpp ../../openfpm_devices/src/Memleak_check.cpp ../../openfpm_devices/src/memory/PtrMemory.cpp)
+add_executable(io main.cpp
+ MetaParser/MetaParser_unit_test.cpp
+ HDF5_wr/HDF5_writer_cuda.cu
+ ObjReader/ObjReader_unit_test.cpp
+ ../../openfpm_vcluster/src/VCluster/VCluster.cpp
+ ../../openfpm_devices/src/memory/CudaMemory.cu
+ ../../openfpm_devices/src/memory/HeapMemory.cpp
+ ../../openfpm_devices/src/Memleak_check.cpp
+ ../../openfpm_devices/src/memory/PtrMemory.cpp)
if ( CMAKE_COMPILER_IS_GNUCC )
target_compile_options(io PRIVATE "-Wno-deprecated-declarations")
diff --git a/src/MetaParser/MetaParser.hpp b/src/MetaParser/MetaParser.hpp
new file mode 100644
index 00000000..7481b740
--- /dev/null
+++ b/src/MetaParser/MetaParser.hpp
@@ -0,0 +1,84 @@
+/*
+ * MetaParser.hpp
+ *
+ * Created on: Mar 3, 2019
+ * Author: i-bird
+ */
+
+#ifndef METAPARSER_HPP_
+#define METAPARSER_HPP_
+
+#include <algorithm>
+#include <iostream>
+#include <iterator>
+#include <string>
+#include <vector>
+
+#include <boost/bind.hpp>
+#include <boost/program_options.hpp>
+#include <boost/tokenizer.hpp>
+
+typedef boost::program_options::options_description MetaParser_options;
+namespace MetaParser_def = boost::program_options;
+
+class MetaParser
+{
+ boost::program_options::options_description desc;
+
+ boost::program_options::variables_map vm;
+
+public:
+
+ MetaParser(boost::program_options::options_description & desc)
+ :desc(desc)
+ {
+ }
+
+ /*! \brief Parse the string of options
+ *
+ * \param string of options
+ *
+ */
+ bool parse(std::string & opts)
+ {
+ std::istringstream iss(opts);
+
+ // Parse mocked up input.
+ boost::program_options::store(boost::program_options::parse_config_file(iss,desc), vm);
+ boost::program_options::notify(vm);
+
+ return true;
+ }
+
+ /*! \brief Return the option opt in value
+ *
+ * \param opt option to check
+ * \param value where to store the value of the option
+ *
+ * \return true if the option has been set
+ *
+ */
+ template<typename T>
+ bool getOption(std::string opt,T & value)
+ {
+ if (vm.count(opt))
+ {
+ value = vm[opt].as<T>();
+ return true;
+ }
+
+ return false;
+ }
+
+ /*! \brief clear everything you parsed so far
+ *
+ *
+ */
+ void clear()
+ {
+ vm.clear();
+ }
+};
+
+
+#endif /* METAPARSER_HPP_ */
diff --git a/src/MetaParser/MetaParser_unit_test.cpp b/src/MetaParser/MetaParser_unit_test.cpp
new file mode 100644
index 00000000..a02a9c2d
--- /dev/null
+++ b/src/MetaParser/MetaParser_unit_test.cpp
@@ -0,0 +1,117 @@
+/*
+ * MetaParser_unit_test.cpp
+ *
+ * Created on: Mar 3, 2019
+ * Author: i-bird
+ */
+
+#define BOOST_TEST_DYN_LINK
+#include <boost/test/unit_test.hpp>
+
+#include "MetaParser.hpp"
+
+BOOST_AUTO_TEST_SUITE( vtk_writer_tests )
+
+BOOST_AUTO_TEST_CASE( vtk_writer_meta_parser_use )
+{
+ std::string test_options("time = 5.0");
+ std::string test_options2("time=6.0");
+ std::string test_options3("time =7.0");
+ std::string test_options4("time= 8.0");
+ std::string test_options5("time= 9.0");
+
+ double time = 1.0;
+
+ MetaParser_options opts;
+ opts.add_options()
+ ("time", MetaParser_def::value<double>(&time));
+
+ MetaParser mp(opts);
+ mp.parse(test_options);
+
+ BOOST_REQUIRE_EQUAL(time,5.0);
+
+ time = 0.0;
+ bool exist = mp.getOption("time",time);
+
+ BOOST_REQUIRE_EQUAL(exist,true);
+ BOOST_REQUIRE_EQUAL(time,5.0);
+
+ exist = mp.getOption("invalid",time);
+ BOOST_REQUIRE_EQUAL(exist,false);
+
+ // parse another
+
+ mp.clear();
+
+ time = 0.0;
+ mp.parse(test_options2);
+
+ BOOST_REQUIRE_EQUAL(time,6.0);
+
+ time = 0.0;
+ exist = mp.getOption("time",time);
+
+ BOOST_REQUIRE_EQUAL(exist,true);
+ BOOST_REQUIRE_EQUAL(time,6.0);
+
+ exist = mp.getOption("invalid",time);
+ BOOST_REQUIRE_EQUAL(exist,false);
+
+ // parse another
+
+ mp.clear();
+
+ time = 0.0;
+ mp.parse(test_options3);
+
+ BOOST_REQUIRE_EQUAL(time,7.0);
+
+ time = 0.0;
+ exist = mp.getOption("time",time);
+
+ BOOST_REQUIRE_EQUAL(exist,true);
+ BOOST_REQUIRE_EQUAL(time,7.0);
+
+ exist = mp.getOption("invalid",time);
+ BOOST_REQUIRE_EQUAL(exist,false);
+
+ // parse another
+
+ mp.clear();
+
+ time = 0.0;
+ mp.parse(test_options4);
+
+ BOOST_REQUIRE_EQUAL(time,8.0);
+
+ time = 0.0;
+ exist = mp.getOption("time",time);
+
+ BOOST_REQUIRE_EQUAL(exist,true);
+ BOOST_REQUIRE_EQUAL(time,8.0);
+
+ exist = mp.getOption("invalid",time);
+ BOOST_REQUIRE_EQUAL(exist,false);
+
+ // parse another
+
+ mp.clear();
+
+ time = 0.0;
+ mp.parse(test_options5);
+
+ BOOST_REQUIRE_EQUAL(time,9.0);
+
+ time = 0.0;
+ exist = mp.getOption("time",time);
+
+ BOOST_REQUIRE_EQUAL(exist,true);
+ BOOST_REQUIRE_EQUAL(time,9.0);
+
+ exist = mp.getOption("invalid",time);
+ BOOST_REQUIRE_EQUAL(exist,false);
+
+}
+
+BOOST_AUTO_TEST_SUITE_END()
diff --git a/src/VTKWriter/VTKWriter_point_set.hpp b/src/VTKWriter/VTKWriter_point_set.hpp
index ef19ca8c..ce920abd 100644
--- a/src/VTKWriter/VTKWriter_point_set.hpp
+++ b/src/VTKWriter/VTKWriter_point_set.hpp
@@ -14,6 +14,7 @@
#include "is_vtk_writable.hpp"
#include <string>
#include "byteswap_portable.hpp"
+#include "MetaParser/MetaParser.hpp"
/*! \brief Store a reference to the vector position
*
@@ -337,6 +338,37 @@ class VTKWriter<pair,VECTOR_POINTS>
return v_out;
}
+ /*! \brief return the meta data string
+ *
+ * \param meta_data string with the meta-data to add
+ *
+ */
+ std::string add_meta_data(std::string & meta_data)
+ {
+ std::string meta_string;
+
+ // check for time metadata
+ MetaParser_options opts;
+ opts.add_options()
+ ("time", MetaParser_def::value<double>());
+
+ MetaParser mp(opts);
+ mp.parse(meta_data);
+
+ double time = 0.0;
+ bool exist = mp.getOption("time",time);
+
+ if (exist == true)
+ {
+ meta_string += "FIELD FieldData 1\n";
+ meta_string += "TIME 1 1 double\n";
+ meta_string += std::to_string(time);
+ meta_string += "\n";
+ }
+
+ return meta_string;
+ }
+
public:
/*!
@@ -381,6 +413,7 @@ public:
template<int prp = -1> bool write(std::string file,
const openfpm::vector<std::string> & prop_names,
std::string f_name = "points" ,
+ std::string meta_data = "",
file_type ft = file_type::ASCII)
{
// Header for the vtk
@@ -413,6 +446,8 @@ public:
// Data type for graph is DATASET POLYDATA
vtk_header += "DATASET POLYDATA\n";
+ vtk_header += add_meta_data(meta_data);
+
// point properties header
point_prop_header = get_point_properties_list(ft);
diff --git a/src/VTKWriter/VTKWriter_unit_tests.hpp b/src/VTKWriter/VTKWriter_unit_tests.hpp
index ee7d21e5..de10b806 100644
--- a/src/VTKWriter/VTKWriter_unit_tests.hpp
+++ b/src/VTKWriter/VTKWriter_unit_tests.hpp
@@ -1041,6 +1041,20 @@ BOOST_AUTO_TEST_CASE( vtk_writer_use_point_set )
test = compare("vtk_points_pp.vtk","test_data/vtk_points_pp_test.vtk");
BOOST_REQUIRE_EQUAL(test,true);
+#endif
+
+ // Create a writer and write
+ VTKWriter<boost::mpl::pair<openfpm::vector<Point<3,double>>,openfpm::vector<aggregate<float,Point<3,float>>>>,VECTOR_POINTS> vtk_v3;
+ vtk_v3.add(v1ps,v4pp,75);
+
+ vtk_v3.write("vtk_points_pp_header.vtk",prp_names,"points","time=5.123");
+
+#ifndef SE_CLASS3
+
+ // Check that match
+ test = compare("vtk_points_pp_header.vtk","test_data/vtk_points_pp_header_test.vtk");
+ BOOST_REQUIRE_EQUAL(test,true);
+
#endif
}
@@ -1171,8 +1185,8 @@ BOOST_AUTO_TEST_CASE( vtk_writer_use_point_set_binary )
vtk_v.add(v3ps,v3pp,90);
openfpm::vector<std::string> prp_names;
- vtk_v.write("vtk_points_bin.vtk",prp_names,"vtk output",file_type::BINARY);
- vtk_v.write("vtk_points_bin2.vtk",prp_names,"vtk output",file_type::BINARY);
+ vtk_v.write("vtk_points_bin.vtk",prp_names,"vtk output","",file_type::BINARY);
+ vtk_v.write("vtk_points_bin2.vtk",prp_names,"vtk output","",file_type::BINARY);
#ifndef SE_CLASS3
@@ -1190,7 +1204,7 @@ BOOST_AUTO_TEST_CASE( vtk_writer_use_point_set_binary )
VTKWriter<boost::mpl::pair<openfpm::vector<Point<3,double>>,openfpm::vector<aggregate<float,Point<3,float>>>>,VECTOR_POINTS> vtk_v2;
vtk_v2.add(v1ps,v4pp,75);
- vtk_v2.write("vtk_points_pp_bin.vtk",prp_names,"vtk output",file_type::BINARY);
+ vtk_v2.write("vtk_points_pp_bin.vtk",prp_names,"vtk output","",file_type::BINARY);
#ifndef SE_CLASS3
@@ -1286,7 +1300,7 @@ BOOST_AUTO_TEST_CASE( vtk_writer_use_point_set_binary )
openfpm::vector<std::string> stub;
- vtk_v.write("vtk_points_2d_bin.vtk",stub,"vtk output",file_type::BINARY);
+ vtk_v.write("vtk_points_2d_bin.vtk",stub,"vtk output","",file_type::BINARY);
#ifndef SE_CLASS3
@@ -1302,7 +1316,7 @@ BOOST_AUTO_TEST_CASE( vtk_writer_use_point_set_binary )
VTKWriter<boost::mpl::pair<openfpm::vector<Point<2,double>>,openfpm::vector<aggregate<float[3],double[2]>>>,VECTOR_POINTS> vtk_v2;
vtk_v2.add(v1ps,v4pp,75);
- vtk_v2.write("vtk_points_2d_pp_bin.vtk",stub,"vtk output",file_type::BINARY);
+ vtk_v2.write("vtk_points_2d_pp_bin.vtk",stub,"vtk output","",file_type::BINARY);
#ifndef SE_CLASS3
diff --git a/test_data/vtk_points_pp_header_test.vtk b/test_data/vtk_points_pp_header_test.vtk
new file mode 100644
index 00000000..7cb8f121
--- /dev/null
+++ b/test_data/vtk_points_pp_header_test.vtk
@@ -0,0 +1,515 @@
+# vtk DataFile Version 3.0
+points
+ASCII
+DATASET POLYDATA
+FIELD FieldData 1
+TIME 1 1 double
+5.123000
+POINTS 100 float
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GitLab